Clupea harengus (Atlantic herring): 105905969 Help Entry 105905969         CDS       T09045                                  Symbol pcdh1a Name (RefSeq) protocadherin-1   KO K16498   protocadherin delta 1 Organism char  Clupea harengus (Atlantic herring) Pathway char03273   Virion - Lassa virus and SFTS virus Brite KEGG Orthology (KO) [BR:char00001]  09120 Genetic Information Processing   09125 Information processing in viruses    03273 Virion - Lassa virus and SFTS virus     105905969 (pcdh1a)  09180 Brite Hierarchies   09181 Protein families: metabolism    01009 Protein phosphatases and associated proteins [BR:char01009]     105905969 (pcdh1a)   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:char04515]     105905969 (pcdh1a) Protein phosphatases and associated proteins [BR:char01009]  Protein serine/threonine phosphatases   Phosphoprotein phosphatases (PPPs)    Protein phosphatase-1     PP1-interacting proteins (PIPs)      105905969 (pcdh1a) Cell adhesion molecules [BR:char04515]  Cadherins   Protocadherins    105905969 (pcdh1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Protocadherin Cadherin_2 Cadherin_CELSR2_9th PepSY Motif Other DBs NCBI-GeneID:  105905969 NCBI-ProteinID:  XP_012689514 Ensembl:  ENSCHAG00000026651 UniProt:  A0A6P3W4R5 LinkDB All DBs Position 8:complement(11595653..11661459) Genome browser AA seq 1223 aa AA seqDB search MKESTGLAFQHRELAPDKKSSPKARVWLSKASMDFPLRALILWVLLLDPCCMAVVGGVMY RVPEEQPPSTLIGSLASDQGLPDSGHLYKLEVGSPYLRVDGKTGDIFTTEIPIDRETLKN CRNKGKPCFLEFEVSVTDLIQNQSPRLIEGRIEVQDINDNTPQFNSPVLTLAIPENTQSG VLFPIPLATDRDTEENGVSDYKLAAGPDASSLFSLQVAEDRGEKMPQLIVLGSLDREQKD SYDLSIKVLDGGTPQRQSSALLRVVITDSNDNAPRFEKSSYEAKVAENSPIGHSVLQVKA NDSDLGPNGEIEYTLHQATDPVPKLLRIDRSTGIIYVKGALDREEINSLKFYVVARDKGP TPKSSKAFVEIEVTDQNDNAPAVEIRGIGLVTHSDGVANISEDMPVGTAVALVQVSDQDE DENAVVTCVVAGDVPFQLRLASDSAAEHKKKYFLQTTTPLDYEDIREYRVQIVAVDSGNP ALSSTNSLKVQVTDINDNSPIFSPSLFEVDFKEENQPGEKILDVVAKDADSGTNAELTYQ IVAEPSINGLFEIDANTGTVRARSPLDREHKERYEFQVVAADKGLPSHSGTATVVVRVLD RNDNEPKFMLNRYTFSVMENRPPLSPVGMVTVMDMDKGENAQVRLSVEPDSGKFIVKNGT GTILSSISFDREKESSYTFRLKAVDGGDPPRSSYVGVVINVLDENDNAPIVIKPSNSSFR RLSPLAAPDSRVEVVEAEDMDTGPNAELVYSITGGNPHELFHISPSDGEITLAKELTRKH SGLHRLVVRVSDRGKPTRHTTALVHIYVNETIANVSLVEALVGHSLYTPLDMDIAGDPDF DPAHRSNILFGSLAGVAGVILVIVVVVFIRHRIQRETKSGYQAGKKETKDLYTPKQGPKS SKGKKGRKGKPPKSPKPLGEEEEVSLQKSLKFNLDGVSDSPRIHLPLTYPPGSPDLGRHY RSNSPLPSIQLQAQSPSASQKHQAVQELPATNTFVGTGGDDNSTGSDQYSDYSYKANQAK YNTKQLPHRRVTFSTSNPVQDLQDSSQQSYYDSGLEESETPSSKSSSGPRIGPLALPEDH YERTTPDGSIGEMEHPENDIRSLPDVAMTGNCTQECTELGHSDACWMPGQPSPIRKTRNT PKLSTFVPYQERGSLGRLANGSARLGGGEEQRPRIPPSRSAYSSGGHAPSQDCPLEEVPL SVASEYPPTSPPSSHTSKREIYL NT seq 3672 nt NT seq  +upstreamnt  +downstreamnt atgaaagagagcactggtctcgcgtttcaacaccgggagctggcccctgacaagaagtct tcgccgaaggctagggtgtggctgtccaaggcctccatggattttcctctgagagcgctc atactgtgggtccttctgctggacccctgttgcatggcagttgtgggtggagtcatgtac cgggttcccgaggagcagcctcccagcacattaattggaagcctggcatcggaccaaggc ctgccagacagcggccacctgtacaagctggaggttggctctccctacctacgggtcgat ggcaagacaggggacatcttcaccaccgagatcccaattgaccgcgagaccctgaagaac tgccggaacaagggcaagccttgcttcctggagttcgaggtgtccgtcaccgacctgatc cagaaccagagcccccggctgatcgagggtcggatcgaggtgcaggacattaacgacaac acaccccagttcaactcacccgtcctcaccctagccatcccagaaaacacccagagtggg gtgctcttccccatcccgctggccactgaccgagacacggaggagaatggagtgtcggac tacaagctcgccgccggaccggatgcttcgtcgctcttcagccttcaggtggccgaggat cgaggcgagaagatgccccagctcattgtgttgggaagccttgaccgcgagcagaaggac tcgtatgacctcagcatcaaagtactggatgggggaacccctcaacgccagagcagtgcc ttgctgagggtcgtcatcaccgactctaacgacaatgcacccagattcgagaaatcgtca tacgaggcgaaagttgccgaaaacagtcccattggacactcagtgcttcaggtgaaggct aatgactctgaccttggtcctaatggcgagattgagtacacccttcaccaggcaactgac cctgtcccaaaactcttgaggatcgatcgttccactggtattatctatgttaaaggggca ctggatcgggaagagatcaacagtttaaagttttatgtggttgcgcgggataaaggaccg acgcccaagtcgtccaaagcatttgttgagattgaagtgacagaccagaacgacaatgcc ccagctgtagagatccgtggaattggcttggtgactcacagtgacggagtggccaatatt tctgaggatatgccagttgggacagcagttgccttggtccaggtctcagatcaggatgaa gatgagaatgcagtggtgacttgtgtcgttgcaggtgatgttccattccaactgcgctta gcaagtgactccgctgccgaacacaagaagaagtatttcctgcagactacgacccctctc gactacgaggacattcgggaatatcgggtccagatagttgctgtggactcaggtaaccct gctctttccagcacaaactcgctgaaggtgcaagtgactgatatcaacgacaactccccg atcttttcaccttccctatttgaggttgactttaaagaggaaaaccagcctggagagaag attctagatgtggttgccaaagatgctgacagtggcaccaatgcagagctcacctaccaa atagttgcggagccctccattaatggtctcttcgagattgacgctaacacagggacagta cgagcacgtagtcctctggacagagagcacaaggaaaggtacgagtttcaggttgttgca gctgacaaaggactgcctagtcacagtggtacagccacagtcgtggtcagggtactcgat cgcaatgacaatgagcctaaattcatgttgaatcgatacaccttctcagttatggagaac aggcccccccttagccctgtgggcatggtgactgtcatggacatggacaaaggggaaaat gctcaagtgcgcctatcggtcgagccagacagtgggaagtttattgtcaaaaatggcaca gggacgatcctgtccagcatttcctttgatcgagagaaagagagtagttacacattccgt ctaaaagctgtagatggtggcgatcctcctaggtcatcttacgtaggtgtggtgatcaac gtcctggatgaaaatgacaatgcacctatcgtcatcaagccctcaaactcgtccttcaga cgcctatcaccattagctgccccagacagccgtgtggaggtcgttgaggctgaggatatg gatactgggcccaacgcagagcttgtttatagtatcacagggggcaaccctcatgaactc ttccacatatccccatccgacggtgagattacactggccaaggaacttacccgtaaacac agtggtcttcaccgtcttgtggtcagagtgagtgacagggggaaaccaactcgtcacacc actgccctcgtgcacatttatgtcaatgaaaccattgcaaacgtcagtcttgtggaggca ctggtcggacacagcctctacaccccgttagacatggacattgctggtgaccctgacttt gacccagctcatagaagtaatatcctttttgggagtttagcaggtgtggctggagtcatc ctggtgatagtggtggtggtgttcatccggcaccgcattcagcgggagactaagagtggc taccaggctggtaagaaagagaccaaggacctctacactcctaagcagggccctaagagc agcaaaggcaagaagggtaggaaagggaagccgccaaagtcccccaagcccctcggggaa gaggaagaggtcagtctccagaaaagcctgaagttcaacctggacggtgtcagcgacagc cccaggatacacctccctctgacatatcctcctggcagtccagacctgggtcgtcattac cgctccaactccccccttccctccattcagctccaggctcagtcgccatcagcctcccag aagcaccaagcagttcaggagctccctgccaccaacacctttgtggggaccggtggggat gacaactccactggttcagaccagtactcggattacagctacaaggccaaccaagcgaag tacaacaccaaacagcttcctcatcgccgagtgactttctccacatccaatccggtgcag gatctgcaggactcctcccaacagagttactatgacagcggcctggaggagtcagagaca cccagcagcaagagctcttctgggccccgcatcggacccctggccctgcccgaggaccac tacgagaggaccacccccgacggcagcatcggcgagatggagcatcccgaaaacgatatc cgatccctgcccgacgtggccatgacgggcaactgcacccaggagtgcactgagctgggc cactctgacgcctgctggatgcccgggcagccctcgcccatccgcaagacgcgcaacacg cccaagctctccacctttgtgccttaccaggagagggggagcctcgggcgcctggccaat ggcagcgccaggctgggcgggggggaggagcagaggccccgcatcccgccctctcgcagt gcctactccagtggaggccacgcccccagccaggactgcccattggaggaggtgccactg agcgtggccagtgagtacccccccaccagcccgccctccagccacacctccaagcgggaa atctacctgtga

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