Clupea harengus (Atlantic herring): 105905999
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Entry
105905999 CDS
T09045
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04110
Cell cycle
char04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
105905999 (smc1b)
04114 Oocyte meiosis
105905999 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
char03036
]
105905999 (smc1b)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
105905999 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
105905999 (smc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_15
AAA_21
AAA_29
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
105905999
NCBI-ProteinID:
XP_042565592
Ensembl:
ENSCHAG00000009034
UniProt:
A0A8M1KNY7
LinkDB
All DBs
Position
2:6149452..6171837
Genome browser
AA seq
1233 aa
AA seq
DB search
MGYLKQLDVENFKSWRGKQVIGPFKRFNCIIGTNGSGKSNVMDALGFVMGERASNLRVKH
TRDLIHGAHIGKAVSKTASVTMRYCNDNDEELNFCRIVAGDSSEYYINGKQVTLAKYSGE
LEKIGIVVKARNCLVYQGAVESIAMKNAKERTRMFERISNSLELAGEYEKKCAALQKAKE
DTQFHFNRKKAATAERKQVSKDKAEAMKFQALLDDVGECRLQQNLFQLYRNELGTQVVLG
CLRERQDAAAAQKKVLETWEQTVKSQKKEHGRLSRELQQIEKQIRGEEQKLSLQRPQYIK
AKVNTSHHENKAQESRSGLQKGQRQREKKEEELEELRGQLGELEKVWRNYEREMEKQEAA
RGTDVQLGEAQLKRYKELKEVARKQGATLDQKLEKLQWDVKADREKLDFDQRKKLEVEAN
IKSCMSQLEDFRRRADKLLEYTATCSSSVEELSSQEARLQQELEVGRVRSLELNEELGTV
LGELQNARVDHHENRRQQKRDELLESLRRLYPDVLFGRLVDLCQPIHKKYQLAVAKVFGR
YMNAIVVTNEKVARDCIKFVKQEMAEPETFLPIDYLDVAPLNERLREQRGCKLLLDVVQT
SAGAPELKRVLLFVCGNTLVCETIEEARALAFGPERQKTVALDGTMFSKSGVISGGSLHL
RSKARRWEERDMIKLKEKKDQLTAELRTLLKLRHKEAELQQIKAQAQGNQTRLKYSHTEL
DALRKKTVPACQAEISRLESELSNLESQISVAEKSVEKKEGELKRLKDKANQMEDGVFSD
LCLEIGVSNIREYEQEYVKQQQEVDRKRLQCESQRTRLNAQLEYEQGQLQQLNKKLQKLQ
DAIAKEEDTIRTLKKDEEKMLVLVDETQARGQELKGVSTDKKSEVSIAKTDLDQKVKKLQ
EVSRELTRLQKEVLSVEASLEERRLGRHNLLLGCKIEGIPVTLLSGNMDDISDVQLDSES
QSTCTLDIYEREEQMQIDYTALADELKALGEEGEVEKELQGLREKLSSLEGVIQRSEPPN
LKALEKMREIRDSFKTVVDAFEESTNMARRRNHEFEQVKANRFRLFSQCFEHVCVAIDQI
YKQMCRNTSAQAILSAENPDEPYLDGISYNCVAPGKRFMAMDNLSGGEKAIAALALVFAI
HSFRPAPFFVLDEVDAALDNTNIGKVTGFIREQCRENFQVIVISLKEEFYSRADVLLGVY
SESGDTISSRVLSIDLTPYPLTEDTLSQRDKEM
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgggttacttaaagcagttagacgtcgaaaatttcaaatcatggcgggggaaacaagta
attggaccttttaaaaggttcaactgtattattggaacaaatggctcagggaagtccaat
gtcatggatgccctggggtttgtaatgggcgagcgggcttcgaatctgagggtgaaacac
accagagacctcatccacggagctcatattggcaaggcagtttccaaaacagccagtgtt
actatgcgatactgcaacgataacgacgaagaactgaacttctgcaggattgtcgcaggt
gactcttctgaatattacatcaacggcaaacaagtgacattggccaagtactcaggagaa
ctggagaagattggcatagtggtgaaagccaggaattgtctggtgtaccagggcgctgtg
gagtccattgctatgaagaatgccaaggagcggacgcgcatgtttgaacgcatcagtaac
tctctggagctggctggcgagtacgagaagaagtgcgccgctctgcagaaggccaaggag
gacacgcagttccacttcaacaggaagaaggccgccacggccgagaggaaacaggtctcc
aaagacaaggcggaggcgatgaagttccaggcgttgctggatgatgtgggagagtgcagg
ctgcagcagaacttgttccagctctaccgcaacgagctcgggacgcaggtcgtcttgggc
tgcctgagggagcggcaggacgccgccgcggcccagaagaaagttctggagacgtgggag
cagacggtgaagagccagaagaaggagcacgggcgtctgagccgagagctccagcagata
gagaagcagatccgtggggaggagcagaaactgagcctgcagaggcctcagtacatcaag
gccaaagtgaacacgtctcaccacgagaacaaggcccaggagagtcgctcgggcctgcag
aagggccagcgccagcgggagaagaaggaggaggagctggaggagctccgcgggcagctg
ggggagctggagaaggtctggaggaactacgagagggagatggagaagcaggaggccgcc
agggggacagatgtgcaactaggagaggcacagctgaagcgctataaggagctgaaggag
gtggccaggaagcagggcgccaccttggatcagaagctggagaagctgcagtgggatgtg
aaggcagacagagagaagctggacttcgaccagaggaagaagttggaagtggaggcaaac
attaagagctgtatgtctcagctggaagacttcaggaggagagctgacaaactgttggag
tataccgccacctgcagttcgtctgtggaggagctgagctcccaggaggcgcgtctgcag
caggagctggaggtgggtcgcgtgcgctccctggagctgaacgaggagctggggacggtt
ctgggggagctgcagaacgcccgcgtggaccaccatgagaaccgacgccagcagaaacga
gacgagctgctggagagcctgcgcaggctgtacccggatgtgctgtttggccgtctggtg
gacctgtgccagcccatccataagaagtaccagctggccgttgcgaaggtgttcggccgc
tacatgaacgccatcgtcgtgacaaacgagaaagtggctcgcgattgcatcaagtttgtc
aagcaggagatggcggagccagagacgttcctgccgatcgactacctggatgtggcccct
ctgaacgagcgtctgcgtgagcagcggggctgtaagctgctgctggacgtggtgcagacc
tctgcaggagcccccgagctcaagagggtgctgctgtttgtgtgcgggaacacactcgtg
tgcgagaccatagaggaggctcgggcactggcctttgggccggagcgccagaagactgtg
gcactcgatggcaccatgttctccaagtctggggtgatctcgggggggtctctgcacctg
cgcagcaaggctcgccgctgggaggagagagacatgatcaagctcaaggagaagaaggat
cagctcactgcagagctacggactctgttgaaactgaggcataaggaggccgagctgcag
cagatcaaagcacaggctcagggtaaccagacccgactcaagtactcccacacggagctg
gacgccctgcgcaagaagacggtccctgcatgccaggccgagatctctcggctggagagt
gagctgtctaacctggagtctcagatttctgtagcggagaagagcgtggagaagaaggag
ggggagctgaagagactcaaagacaaggccaaccagatggaggatggtgtgttttctgat
ttatgcctcgagatcggcgtgtccaacatccgagagtatgaacaggagtatgtcaaacaa
cagcaggaggtggaccgcaaacggctgcagtgtgagtcccagcgcacgcgcctcaacgcc
cagctggagtacgaacaggggcagctgcagcaactcaacaagaagctacagaaactccag
gacgccatcgccaaggaggaggacaccatccgaaccctgaagaaggacgaggagaagatg
ctggtcctggtggatgagacccaggctcgtgggcaggagctgaagggtgtgtctacagac
aagaagtcagaggtcagcatcgccaaaaccgaccttgaccagaaggtcaagaagctacag
gaagtctccagagagctgacgcgtctgcagaaggaggtgctgtctgttgaggcgtctctg
gaggagaggaggctgggccgacacaacctgctgctgggctgcaagattgagggcatcccc
gtgaccctgctctcgggaaacatggatgacatcagtgacgtgcagctggactctgagtcc
cagagcacctgcaccctggacatctatgagcgcgaggagcagatgcagatagactacaca
gctctggcagatgagctcaaggccctgggtgaggagggggaggtggagaaggagctgcag
ggcctgagggagaagctgtcctctctggagggagtcatccagcgctcagagccgcccaac
ctcaaagccctggagaagatgagggagatcagggacagcttcaagactgtggtggacgct
tttgaggagagcaccaacatggctcgtcggcgtaaccatgagtttgagcaggtcaaagcc
aaccgctttcgtctcttcagccagtgcttcgagcatgtgtgtgtggccatcgaccagatc
tataaacagatgtgcaggaacaccagcgctcaggctatcctcagtgcagagaaccctgac
gagccttacctggacggcatcagctacaactgtgtggccccaggcaagcgcttcatggcc
atggacaacctgtccgggggggagaaggccatcgccgccctcgctctcgtctttgccatt
cacagtttccgtcccgctcctttcttcgtgctggacgaggtggatgccgctcttgacaac
accaacatcggaaaggtgacagggttcataagggagcagtgccgggagaacttccaggtg
atcgtcatctcgctcaaggaggagttctactccagagcagacgtactgctgggtgtgtac
tctgagtctggagacaccatctccagtcgtgtgctctccatagacctcaccccctacccc
ctgactgaggacaccctctcacagagagacaaggagatgtag
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