Clupea harengus (Atlantic herring): 105906396
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Entry
105906396 CDS
T09045
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105906396 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105906396 (dhx16)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105906396 (dhx16)
Spliceosome [BR:
char03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105906396 (dhx16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
PWI
AAA_19
AAA_30
nSTAND3
Cas3-like_C_2
Flavi_DEAD
TRI4_N
Motif
Other DBs
NCBI-GeneID:
105906396
NCBI-ProteinID:
XP_031432630
Ensembl:
ENSCHAG00000020072
UniProt:
A0A6P8GAN1
LinkDB
All DBs
Position
11
Genome browser
AA seq
1058 aa
AA seq
DB search
MANLEQWVSDRLHDILGLSDRYVAQFMLGLVRKSTNLQDFIGRLKQTGTIDVDQKVEKFA
QELYEKVPRKQIVEKPARALERHVQEIERKNLTYTLLEESDSDGEVTQEKGKKEKKGKEK
EKEKEKGKKRKHIRQKQQESSSSSEEEKESGQMLSKTQSKEDKEDPEEDWEKEERERQED
LEERDAFAERVKLKDKQKTRGIMERTDKKAYEEAQKRLRMAEDDQRKMLPELRKQSRFEY
LKKREAEKLEDLEAEIADEEYLFSTDHLSERERKELDYKRTVRDLAKDYKKAGAREKEER
KNRYYMPEEIRTKNPPERDLLDLEEGGHEAGGEQSRWEEARVATATLHFGAKEERERRLK
EEHDKYQLVLEEDEMINFVTSAITMKGTLAEKEDGEPQLSQADQQMQSIQEVRRSLPVFP
YRQDLLSAIEQHQVLIIEGETGSGKTTQIPQYLMEEGYNNGGLKIGCTQPRRVAAMSVAA
RVAQEVGVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVVIIDEAH
ERTLHTDILFGLIKDIARFRGDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIYY
TKAPEADYLEACVVSVLQIHVTQPTGDVLVFLTGQEEIEACCELLQDRCRRLGSKISELM
VLPIYANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNAR
TGMESLIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEESTIPEIQRTNLGNV
VLLLKSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPM
LSKMILASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARQNFVVPGGDHMVLLN
VYTQWVESGYSTQWCYENFIQFRSMKRARDVREQLEGLMDRIEVEVCSSDGDYGPIRKAV
TAGYFYHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEI
DSSWLLEVAPHYYKNKELEDSSSKKMPRKQGKALEELG
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atggccaacctggagcagtgggtgagcgaccgccttcatgacatcttgggtctgagtgac
cgatatgtggctcagttcatgctcggtctggttcggaagtccaccaatttgcaagacttc
atcgggcgcctcaagcagaccgggaccattgatgtcgaccagaaggttgagaagtttgca
caggaattatacgagaaggtgccacggaaacagatagtggaaaaaccagctcgagctctg
gagcggcatgtgcaagaaattgagcgaaaaaacctgacctacactctgctggaggagagc
gacagtgatggagaagtaacccaggagaaaggaaagaaggagaagaaagggaaggagaaa
gagaaagagaaggagaaagggaagaagaggaagcacatcagacagaaacaacaggagagc
agctcatccagtgaagaggagaaggaaagtggccagatgctctccaaaacacagagcaaa
gaggataaggaagacccagaggaggattgggagaaggaagagcgggagcggcaggaggac
ctggaggaaagagatgcctttgcggaacgtgtgaagttgaaagacaagcagaagacccga
ggtattatggagaggacagataaaaaggcttacgaggaagctcagaaaagacttaggatg
gcagaggatgaccagcggaaaatgcttcctgagttgaggaagcagtcacgctttgagtac
ctaaagaaacgtgaagctgagaaattagaagacctggaggctgagatagctgatgaagag
tatctcttctctactgaccacctctctgagcgggagagaaaagagctggactacaagcgc
accgtcagggatctggccaaagactacaagaaagcaggagccagggagaaagaagagagg
aagaaccgctactacatgccagaggagatcaggacaaagaaccctcctgaacgggatctc
ctggatcttgaagaagggggccatgaagctgggggagagcagagccgctgggaggaggcg
cgtgttgctacggcaactctgcactttggcgccaaggaggagagggagcgtcggctgaaa
gaggagcatgacaagtaccagttagtgctggaggaggatgaaatgatcaacttcgtcacc
agtgccatcaccatgaaaggaacactagcagaaaaggaggacggggagccacagctctct
caggcagaccaacagatgcagtccattcaggaggttaggcggagcttgcctgtctttccc
tatcgccaagacctactgtcagccatcgagcagcaccaagtgctcattatcgagggggaa
actggctctggcaagacgacgcagatccctcagtatctaatggaggagggatataataat
ggaggtttgaagatcggctgcactcagcctcgtcgagtagcagccatgtctgtggcagct
cgagtggcgcaagaagttggagtgaagctggggaacgaggtgggttacagtattcgtttt
gaggactgcacatcagaacggaccgtattaaagtacatgacggatggcatgcttttgaga
gagtttctcacagagccagatcttgccagctatagcgtggtcattattgatgaagcccac
gagcgcaccctccacacagacatcctgtttggcctcataaaagacatcgcccgtttccgt
ggcgacctgaaggtgctggtggccagtgccacgctggacacagagcgtttctcctgcttc
ttcgatgatgcgcccgtcttcaggatccctggacgacgtttccctgtggacatctactac
accaaggctccagaagcggattatctggaggcgtgcgttgtgtccgtgctgcagatccac
gtcacacagcccactggtgatgtactggtctttctaacagggcaggaggaaattgaggcc
tgctgtgagctgctacaggatcgctgtcggcgcctggggtccaagatatctgagctcatg
gtcctgcccatctatgccaacctgccctcggacatgcaggccaagatcttcaacccaact
ccacctggtgctcgcaaggtggtggtagccaccaacattgcagagacttctctcactatt
gatggcatcatctatgtgattgacccgggcttctgtaagcagaagagctataacgctcgc
actggcatggagtccctcatcgtcacgccgtgttcacgggcttcagccaatcagcgggca
ggaagagcaggcagagtggctgctgggaaatgcttccgtctctacacagcctgggccttc
aagcatgagatggaggaatcaacgatcccagagattcaaaggaccaatctcggcaatgtg
gtgttgctgctcaagagcttgggaattaatgacctgatccactttgacttcatggaccca
cctcctcatgagacccttgttctggccctggagcagctctacgccctgggggccctcaac
catcttggagagctcaccaagctcggcaggagaatggctgagctcccagtggaccccatg
ctgagcaaaatgatcttggcctctgaacagtataagtgttcagaagaggtactgaccatt
gctgctatgctctcggtcaataactcgatcttctatcggcccaaagacaaagtggttcat
gccgataatgcacgccagaactttgtggtaccaggtggagaccatatggtgctgctaaat
gtctacactcagtgggtggagagcggttattccactcagtggtgttacgagaacttcatc
cagttccgctccatgaagcgtgcgcgagacgtccgtgaacagctggaaggtctgatggac
aggatcgaggtggaggtgtgcagctccgatggagactatggaccaatccgcaaggcggtg
acggcgggatacttctaccacacagcacgactcagcaagggcggctacaagacagtgaag
catcagcagacggtctacgtccaccccaacagctccttgttcgaggagcagccacgctgg
ctcatctaccacgaacttgtcttcaccacaaaagagttcatgagacaggtgattgagatc
gacagcagctggctgcttgaggtggcccctcactactacaagaacaaggaactggaggac
tccagcagtaagaagatgccaaggaagcaggggaaggccctcgaggagctgggctga
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integrated database retrieval system
