Clupea harengus (Atlantic herring): 105906660
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Entry
105906660 CDS
T09045
Name
(RefSeq) transcription factor Sox-19a-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105906660
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
105906660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
SOXp
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
105906660
NCBI-ProteinID:
XP_012690299
Ensembl:
ENSCHAG00000018671
UniProt:
A0A6P3W5Q1
LinkDB
All DBs
Position
8:26473565..26476297
Genome browser
AA seq
288 aa
AA seq
DB search
MYSMMEHDLKSHQSGQGMPPVNGPMHGASKQAAANQAIVDPMDKIKRPMNAFMVWSRGQR
RKMAQENPKMHNSEISKRLGVEWKQLTDAEKRPFIDEAKRLRAMHMKDYPDYKYKPRRKT
KPVLKKDHPAAKYPMSAGNLLAAAAVQGPGGSPRMDSYGWGHAGGYAGMQSDALGYSQQP
YRYDLSALQYPSAMTTAQSYMNSNSYSPMSYGSSPQQHSPVMPMVKADPVSHSPTGAPNH
QRGPLQGDLRDMISMYIPNGDTSDTAVQRGYANMQQHYVGGTAPLTHI
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatggaacacgacctgaaatcccaccagagtggccaagggatgccacct
gtgaacgggcccatgcacggggccagcaaacaggcggcggccaaccaggccatcgttgac
cccatggacaaaatcaagcggcccatgaacgccttcatggtctggtcccggggtcagagg
cggaagatggcccaggagaaccccaagatgcacaactccgagatcagcaagcggctggga
gtcgagtggaagcaactgacggacgccgagaagaggccgttcatcgacgaggccaagcgt
ctgcgtgcgatgcacatgaaggattaccccgactacaagtacaaacctcgccgcaagacc
aagcccgtgctgaagaaggaccaccccgccgccaagtaccccatgtcggccggcaacctg
ctggccgcagctgcggtccaaggccccggtgggagtcccaggatggacagctatggctgg
gggcacgcgggcgggtacgcaggtatgcagagcgatgcgcttgggtacagccagcagcct
tatcgctatgacctctcagccttacagtatccctcggcgatgactactgctcaatcctac
atgaactccaactcctacagcccaatgtcctatggcagcagtccccagcagcacagtcca
gtgatgcctatggtgaaggctgacccagtgtcacattccccaactggggccccaaaccac
cagcgggggccccttcaaggggacttgagggacatgatcagcatgtatatcccaaacggg
gacaccagtgacacagccgtccagaggggctatgccaacatgcagcaacactacgtggga
ggaacggcacccctcacccacatctga
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