Clupea harengus (Atlantic herring): 105906838
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Entry
105906838 CDS
T09045
Name
(RefSeq) RNA-binding protein 39-like isoform X3
KO
K13091
RNA-binding protein 23/39
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105906838
Spliceosome [BR:
char03041
]
Common components
Common spliceosomal components
General mRNP proteins
105906838
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
PRP38_assoc
RRM_7
Motif
Other DBs
NCBI-GeneID:
105906838
NCBI-ProteinID:
XP_012690513
Ensembl:
ENSCHAG00000025381
UniProt:
A0A6P3W616
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Position
4:8253277..8269596
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AA seq
524 aa
AA seq
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MADDFDIEAMLEAPYKKDDLKSSSENGQEERSKKKHRSRSGSPERRVSKSRDHKKKKRSR
SRERRRSRSKDKHRSRSRERKGWQRGKKSPFFGAKFNGGPGGKGGPPHTTKLSRRRSRSK
SPFKNKDKSPIRQPIDNLTPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISD
RNSRRSKGIAYVEFLEATSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAMANNLQKGNA
GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFISFADAECAKKA
LEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMARLAEGT
GLQIPPAAQQALQMSGSMPFGNLSDLQAMLIQPPEAQTMNLPSMNQAMNLPTQPLATHCL
QLSNMFSPQAENEPGWDQEIQDDVIEECNKHGGIVHIYVDKNSPQGNVYVKCPTIPTAMA
AVNGLHGRWFAGKMITAAYVPLPTYHNLFPDSVTATQLLMATRR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgactttgatattgaggccatgttggaagctccttataagaaggatgacctc
aagtcctctagtgagaatggccaggaggaacgcagcaagaaaaagcacaggagccggagc
ggcagtccagagcgtcgtgtgagtaagagccgggaccacaagaagaagaagaggagccgc
agccgagagcgccggcgttcgcgcagcaaggacaagcatcgctcacgcagccgagagcgg
aagggctggcaacgtggaaagaagagccccttctttggggcgaaatttaacggtggtcct
ggagggaagggcggcccaccacataccaccaaactaagtcgccgacgctccagaagcaaa
agtcccttcaagaacaaagacaaaagtccaatcaggcaacccatagacaacctgacgcca
gaggagagggatgcacgtactgtgttctgcatgcagctggcagcacgtatacgtccaaga
gacttggaagacttcttttcggcagttggcaaagtaagagatgtcaggatgatctcagac
agaaactcccgcaggtcaaagggcattgcctatgtcgaatttttggaagccacctctgtg
ccgctggctattggactgacaggccagaggctacttggagtgccaatcatcgtgcaggcc
tctcaggcagagaaaaacagggcagctgcgatggccaataaccttcagaagggcaacgct
gggcccatgcgtctgtatgtgggatcgctccacttcaacatcacagaggacatgctgaga
ggaatcttcgagccttttggcaggatcgaaagcatccagctcatgatggacagcgagacc
ggacgctccaaaggatacgggttcatctcttttgcagatgctgagtgcgccaagaaagct
ctcgagcagctgaacggttttgagctggctggccggcccatgaaggtgggtcatgtgact
gagaggacagacgcatccacagccagctcattcctggacaatgatgagctggagcgcact
ggtatcgacctaggcaccactggccgcctgcaactcatggcccgcctcgcagagggcaca
ggcctccaaatccctccagctgcacaacaagcccttcagatgagcggatccatgcccttt
ggcaacctttcagatttacaagccatgttgattcagcccccagaagcccaaacaatgaac
ttgcccagtatgaaccaggccatgaacctgcccacccagcctctggccacacactgcctg
cagctctccaacatgttcagcccacaggctgaaaatgaacctggctgggatcaagagatc
caggatgatgttattgaagagtgcaacaaacatggaggaatagtccacatatatgtggac
aagaactcccctcagggcaatgtttatgtcaagtgtccaactattcctaccgccatggcc
gcagttaacggcctccatggacgctggtttgcaggtaaaatgatcacggctgcctacgtg
cccttgcccacgtaccacaacttgttcccagactcggtgacggccacacagctactgatg
gccacacgccggtga
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