Clupea harengus (Atlantic herring): 105907072
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Entry
105907072 CDS
T09045
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105907072 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105907072 (prpf38b)
Spliceosome [BR:
char03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105907072 (prpf38b)
Complex C
U4/U6.U5 tri-SnRNP related factors
105907072 (prpf38b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
105907072
NCBI-ProteinID:
XP_012690801
Ensembl:
ENSCHAG00000012703
UniProt:
A0A6P3W6D8
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All DBs
Position
22:17687040..17692533
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AA seq
496 aa
AA seq
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MANNAIVGNQQQQQAVNKPTSGKHGNVLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYEL
KTYHEVVDEIYFKVLHAEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLK
LTRKQVMGLITHTDSPYIRALGFMYIRYTQPPSDLVDWYDGFLDDEEELDVKAGGGCVMT
VGEMLRSFLTKLEWFSTLFPRIPVPVQKMIDQQLKARPRKQPPKEEKTEEPAAESARQGE
RKRSRTPSPKRSPDRSRSRSHQRERRGVSFDHELERERDRQRKEREGKDRDRGDKDKDRD
RGDRDRDRERERGDHERRRSRSIEKRSRRSSSREHRKEKEKERERDGENERSRRKERDHH
HERERDRDKDKDKERERSKDKRSKGENEERKHRDEREEKTRHKEEKKSKRSSRSRSKERR
HKAERSSKKRSRSRSHSRHEQPDEKEKEKDRDRGRKKESSQSGEREKERAHKRSRSQERV
RNRRSQSPERRGDGSP
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaacgcaattgtcgggaatcaacagcaacagcaggccgtgaataaacccacc
tcggggaagcatgggaatgtgttgccgctctggggcaacgagaaaacaatgaacttgaac
cccatgatcctcacgaatgtgctctcatctccatatttcaaggttcagttgtatgaactc
aagacataccatgaggttgtggacgagatctacttcaaggtcttgcatgcggagccctgg
gaaaagggaagcagaaagaccgcaggccagacaggcatgtgcggcggggtccgaggcgtt
ggaaccggaggtatagtctctacggcattctgtctgctgtacaagctgtttaccttgaag
ctgacccgcaagcaggtgatgggcctcatcacacacactgactctccctacatcagggct
cttggcttcatgtatataaggtacacacagccaccttctgaccttgtggactggtatgac
ggtttccttgatgatgaggaggagctggacgtgaaggccggcgggggctgtgttatgacc
gtcggcgagatgttgcggtccttcctgaccaagctggagtggttctccacgctgttccca
cgcatccccgtgcctgtacagaagatgatcgatcagcagctcaaagcacggcccaggaag
cagccgccgaaggaagagaagacggaggagcctgcggcagagtcagcacgtcagggcgaa
cgaaaacgctcgcggactcccagtcccaagcgctcccccgaccgctcccgttcccgcagc
caccagagagagcgccgcggcgtcagcttcgatcacgagctggagcgcgagcgagaccgc
cagcgcaaggaacgtgagggcaaggacagggaccggggggacaaggacaaggacagggac
cggggggacagagaccgggatcgagagagggagaggggagaccacgagcggagacgctcc
cggagcatagagaaacgcagccggcgaagctccagcagggagcatcgcaaggagaaggag
aaggagcgagaacgtgatggagagaacgagcgcagtcggcggaaggaaagggatcaccac
cacgagcgtgaaagggacagagataaggacaaagacaaagagagagagcgttcgaaagac
aagaggagcaaaggggagaacgaggagcggaagcatcgggacgagcgcgaggagaagacg
cgccacaaggaggagaagaagagcaagcgctcgagtcgaagccgtagcaaggaacgcagg
cacaaggccgaacgctccagcaagaagcggtcacggagccgcagtcacagccggcacgag
cagccagacgagaaggagaaggagaaggatcgggaccgtggcaggaagaaggagagcagc
cagagtggcgagcgagagaaagagcgcgcgcacaaacgcagccgcagccaggagcgcgtg
cgcaacaggcgcagccaaagcccagagcgtcgtggcgatggctcgccttga
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