KEGG   Clupea harengus (Atlantic herring): 105907078
Entry
105907078         CDS       T09045                                 
Name
(RefSeq) RNA polymerase II elongation factor ELL-like isoform X1
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    105907078
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:char01009]
    105907078
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:char03021]
    105907078
Protein phosphatases and associated proteins [BR:char01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     105907078
Transcription machinery [BR:char03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     105907078
    Little elongation complex (LEC)
     105907078
SSDB
Motif
Pfam: ELL Occludin_ELL Seryl_tRNA_N
Other DBs
NCBI-GeneID: 105907078
NCBI-ProteinID: XP_012690808
Ensembl: ENSCHAG00000009932
UniProt: A0A6P3W647
LinkDB
Position
22:17109315..17130164
AA seq 644 aa
MATLKEEQCYGLSCGRLSNGSNTSIFHVKLTDSALRAIESYQSSKGSTAHPSIRFTGNQG
KISIPHGKTSEEYVTFTFYLSRIGRDNPQGSFDCIQQCATCDGAVELDCLGGIQDKLTVN
ATDDSYQKARQNMAQAEEETRRRGAIVIKQRGRYISKRVQIRKPPASLTDVVAPSRRVSR
PVLISNSSSQRRLGALARPNQEKVAGLPLRERLTHLLALKTYRKAELIVRLQRDGLSPED
RESLDGLLLQVGHLSEKDNTFTLKDALLNDVQRDWPGYTEGDRQLLKRILITKSRKLGQA
QSLLSSSATAEETRSPQREQASSSPSQKRPVPDYIDPLANKKPRISHLASRAQAQPNGGL
SREREASPVSTATESRLPRLELPQPCEPLSDMSSDSAPNSRDSEGSDATAATTTTSVADR
LGHSSAVSTATHPSLPLHPPCQPTAATPTPARKSRKKSRKNKERGRESGRTKDRNRGRER
NRESGLTEDRTREGERDAEANVEDTGSGNQGRSPADVNGTYEHSGVATGTLDSEDYLRSY
RTIVSHEQRQRYKNEFNVEYNEYRALHARIEGVTRQFTVLETQLKELQQGTNQYKTIHNQ
ILQEYRKIKKSNPNYSQDKNRCEYLHNKLAHIKKTIAKYDHKQL
NT seq 1935 nt   +upstreamnt  +downstreamnt
atggcgacgttgaaagaggaacaatgttacgggctttcttgtggtagactgagtaatggc
agcaacacgtcgatatttcacgtcaaactcactgacagcgcgctcagagccatcgagagc
tatcaaagtagcaagggatcaactgcccatccttccattcgtttcactggaaaccaaggg
aaaatctctatccctcatggcaagacctcggaagaatatgtgacattcaccttctacctg
tcccgcattgggcgggacaaccctcagggaagcttcgactgcatccagcagtgcgcaaca
tgtgatggagctgttgagctggactgcctgggcgggatccaggacaagctcacggtgaac
gccacggacgactcctatcagaaggcccggcagaacatggcccaggccgaggaggagacg
cggcggcggggggccatcgtcatcaagcagcggggccgatacatcagcaaaagagtccag
atccgtaagccaccggcgagcctgactgatgtggttgccccctcccggcgcgtgtcgcga
cctgtgctcatatccaacagcagcagccagaggcgcctcggcgccctcgcacggcccaac
caggagaaggtggcggggctgcccctgcgtgagcgactcacccacctgctggcactcaag
acctaccgcaaggccgagctgattgtgcggctgcagcgagatggcctgtcccctgaggac
agggaatctctggatggcctgctgttgcaggtgggccacctcagtgagaaagacaacacg
ttcacactaaaggacgccctgttgaatgacgtgcagagagactggcctggctacacggag
ggagaccggcagctcctgaagaggatccttatcaccaagagcaggaagttaggtcaggcc
cagagtctcctgtcatcatcggcaacagcggaagaaacgagaagtccacagagggagcag
gccagctcctcaccctcacagaagcggccagtgcctgactacattgaccctttagccaat
aagaagcccaggatatcccacctggcgagccgagcccaggctcagccgaatggcgggctg
tcgcgagagagagaggccagccctgtctccacagcgaccgagtcccgtctccccaggctg
gaactcccgcagccgtgcgagcctctgtcggacatgagcagcgactctgcgcccaacagc
cgagacagcgagggctctgacgccaccgctgccaccaccaccactagtgtggccgacagg
ctcgggcacagttcggctgtctccacggcaacgcacccctccctccccctgcatccaccc
tgccagcccactgcggccacacccacccctgctcgcaagagccgcaagaagtccagaaag
aacaaagagaggggccgagagagtggacggacgaaagaccggaatagagggagggagagg
aaccgagagagcggactgacagaagaccggactagagagggggagagggacgcagaggcc
aatgttgaggacacggggagcggcaatcaggggagaagcccagcagatgtcaacggcaca
tatgaacactcgggagttgccacaggaacattggactctgaagactatttaaggagctac
agaacgattgtttcccatgagcagcgtcagaggtacaagaacgagttcaatgtggagtat
aacgagtaccgggccctgcacgcccgcattgagggcgtgacgcgccagttcaccgtgttg
gaaacccagctcaaagagctgcagcagggcaccaaccagtataagaccattcacaaccag
atacttcaagagtatcgcaaaataaaaaagtctaatccaaactacagccaggataagaac
cgttgtgaatacctacacaacaaacttgcacacataaagaaaaccattgcaaagtatgat
cacaagcagctgtaa

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