Clupea harengus (Atlantic herring): 105907100
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Entry
105907100 CDS
T09045
Symbol
taf4b
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105907100 (taf4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105907100 (taf4b)
03036 Chromosome and associated proteins [BR:
char03036
]
105907100 (taf4b)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105907100 (taf4b)
Coactivators
SAGA/TFTC/STAGA complex
105907100 (taf4b)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
105907100 (taf4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
105907100
NCBI-ProteinID:
XP_031431168
Ensembl:
ENSCHAG00000008130
UniProt:
A0A6P8FT25
LinkDB
All DBs
Position
10:10268270..10277956
Genome browser
AA seq
795 aa
AA seq
DB search
MSANSSSECSQTQPSENTCQTAADVGATESSTSVSPTTEGSVVAQVQLKSTITDTQEPPH
KLAANTGLSITSNGEAVSNTLVTSSHPPSTATGGGAVAQTSVAPIQVCPASSASPRAPVP
KIQTTPSLPTMANTVGPTPPRMPAPKSSVAMVRPPQTASVQLPATFQIPPGMVLVRSDSG
QLMLVSQQALAQAQRVITNPGLIQPSAATVIRKPGSAPVIRVCPPVSNPKPTYTIGTMPQ
RPSSTAGLTVQRPNAVGRVSYRPSSAIGTCLQRPSFAVGAIPQRPTSAVGTIPQRLNSVV
GATRQHTTIIKTTGGASTTPAGIPASRPGSLAPRILSANVPTKPKPKPTPSDAVTSQQTI
ENVNKCKNFLVTLMKLASSGSRSSDMGMNVRNLVKSLLDGKLEAEEFTEKLYSELKSSPQ
PYLVTFLKRSLPAVRQFTPNSQLFIQQCEQPSPQAAPPAQASTSTSTSTQPSSSVKTTQP
ARPTSLVIQPQQGMVIKKPMTLQHTAQGGGVSKHFVLQTTRTPTTGVIVGPSAQITKSHT
ASSLPTLNLRFKESTGTFRDEDDLNDVASMAGVSVSEERARILATGAESVGLVIRSCRDE
PFLCPSALRTRITNTALAGGVSGLEGDIVGLVSHATEERLRDLLGKVTVTAQHRHMQLKD
CWQYRQVTDVRSQLRFLEHVEQLQQQRMEEEEREMLLRIAKSRSSNEDPEQQSLRQRAKE
MQQLELAQAQHRQANLAALAAIGPRRKRPLEVSSTLGQRSTPRSVTRVTLRDLIFCMEQD
SHLSRSLLLYSAMLK
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgaacagcagttcagagtgcagccaaacacaaccatccgagaacacatgccaa
actgcagcagacgtcggcgctacggaaagttcaacatctgtgtcacctacgactgaaggg
agcgttgtagcgcaagtacaattaaaaagtacaattacagacacacaagaaccaccccac
aaactcgcagctaacaccgggctaagtattactagtaatggcgaagcggtatccaacacg
ctggtcacttcctcgcacccaccaagtaccgcgaccggcggtggtgcggttgctcagaca
agcgtggcacccatccaggtttgtccagctagtagtgcctctcctcgcgcccccgtgcca
aaaatccagactactccctctctacctacaatggcgaacactgtcggccctactcctcca
aggatgcctgcacccaagtccagtgtggccatggtaaggcccccacaaactgcttcagtt
cagcttcctgcaacattccagatcccaccaggtatggtactggtgcgtagcgacagtggg
caactaatgcttgtatcccagcaggctttagcacaggctcagagggtcatcactaatcca
ggcctgatccagccatctgcagccaccgtaatcaggaagccaggatctgccccggtcatc
agagtctgccctcctgtcagcaatcccaagcccacctataccatcgggaccatgccacag
aggcctagctccaccgcagggctcaccgtacagaggcccaatgctgtggggagggtttcg
tacaggcctagctctgccattgggacctgcttacagaggcctagctttgcagtgggggcc
attcctcagagacccacctctgccgtgggcacgatcccccagaggctcaactccgttgtc
ggggccactcgtcaacacaccaccatcatcaagactacaggtggagcctccaccactcca
gctgggattccggcgagccgtccaggaagccttgcccctcggatcctttcagcaaatgtc
cccaccaagcccaagcccaagcccacgccctcagatgctgtcacctcacaacagaccatt
gagaatgtgaacaagtgtaagaacttcctggtgacgctgatgaagttggcctccagtggc
agccgctcctcagacatgggcatgaacgtgcgcaaccttgtcaaaagcctgctggatggg
aagcttgaagcagaagagttcacagagaaactttactctgagctgaaatcatctcctcaa
ccatacttggtgactttcctgaagaggagtctccctgctgttcggcagttcaccccaaac
tcccagctcttcatccagcagtgtgagcagcccagtcctcaggctgcacccccagcccag
gcctctacctccacctccacctccacccagccctcctcatcagtgaaaaccactcagcca
gccaggcccacttcgctggtgattcagccccagcaaggtatggtcattaaaaagcctatg
accttacaacatactgcacagggagggggtgtgtccaagcactttgtcctccagaccacc
agaacacccaccacaggtgtgatagtggggccctcagcacagatcacaaaatcacataca
gcttcatcactacccactctcaatctcagattcaaggagagcaccggcaccttccgggat
gaggatgatctcaatgatgtggcgtccatggccggtgtgagcgtcagtgaggagagagcc
cgtatcctggcaaccggggcggagtccgttggcttggtcattaggtcttgccgggacgag
ccattcctttgtccttctgccctacgaacacgcattactaatacagctctggctggaggt
gtgtccggtttggaaggagacattgtgggtttggtgtcccatgccactgaggaacgactg
cgagacctgctggggaaagtcacagtcactgcacaacaccgccacatgcagttgaaggac
tgctggcagtaccggcaggtgactgatgtccggagtcagctgcgctttctggagcacgtg
gagcaactgcagcagcagcgcatggaggaggaggagagagagatgctgctccgcattgcc
aagagtcgttccagcaatgaagaccctgaacagcagagtctcagacagagggcaaaagag
atgcagcagctggagctggctcaggcccagcacaggcaggccaacctggcagctcttgcc
gccatcggtccccgcaggaagcgcccccttgaggtaagcagtacactgggtcagaggagc
acgcccaggtctgtgacgcgggtcactctccgggatctcatcttttgtatggagcaggac
tcccacctctcgcgctcccttctactctacagcgccatgctgaagtaa
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