Clupea harengus (Atlantic herring): 105907281
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Entry
105907281 CDS
T09045
Symbol
hmbox1b
Name
(RefSeq) homeobox-containing protein 1 isoform X2
KO
K24885
homeobox-containing protein 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105907281 (hmbox1b)
Transcription factors [BR:
char03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
105907281 (hmbox1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
DUF494
HTH_26
HTH_24
HTH_37
HTH_31
CUT
HTH_23
Motif
Other DBs
NCBI-GeneID:
105907281
NCBI-ProteinID:
XP_012691025
Ensembl:
ENSCHAG00000026418
UniProt:
A0A6P3W714
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Position
15:complement(17627906..17647593)
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AA seq
482 aa
AA seq
DB search
MSHYTDEPRFTIEQIDLLQRLRRTGMTRAEILHALDTLERLDREHSDKFGRRPPLPPPAM
APPASAAIGTNNATSTAANSSANSNDIMAAPGSLPSTTSIATQTQYHTALSPSPSNSYVP
SPPPAPGPPPSAALLPSPVSLVAMAQNGRDNLAATPNGKLSPPRYPVNSARAFPFEGGEE
DMDVDDKVEELMRRDSSMVKEEIKAFLANRRISQAVVAQVTGISQSRISHWLLQQGSDLS
EQKKRAFYRWYQLEKTTPGATLNMRPAPMSLDEIEWRQTPPPLSTAVGSFRLRRGSRFTW
RKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRR
KEIKRRANIEATILESHGIDVQSPGGHSNSDDIDGNDYAEQLSLQGCDVPYFEKRTMTRP
FGFYRLEPTSPTQDDAAGHNDHQDPISLAVEMAAVNHTILALSRPGTVGVPSDIKTEALE
DE
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtctcactacacggatgagcctcgcttcaccattgagcagatcgacctgctccagcgg
ctgcggcgcacgggcatgacgcgtgctgagatcctacacgcgctcgacacgctggagcgg
ctggaccgtgagcatagcgacaagttcggccgacgcccccccttaccgcccccggccatg
gcacccccggcctccgccgccatcggcaccaacaacgccacctccacggccgccaacagc
agcgccaacagcaacgacatcatggccgccccgggatcccttccctccaccacctccatc
gccacgcagacacagtaccacaccgccctctccccatcaccaagcaacagctacgtccca
tccccgccccctgccccaggcccacccccgtcagccgcactcctgccctcccctgtctcg
ctggtcgccatggcgcagaacgggcgcgacaatctggcggccacgcccaacggcaagctc
tcaccaccgcggtaccctgtgaacagcgcccgcgcttttcccttcgagggaggagaggag
gacatggacgtagacgacaaggtggaggagctaatgaggcgggacagcagcatggtgaag
gaggagatcaaggccttcctggccaaccgccgcatctctcaggccgtggtggcccaggtc
acaggcatcagtcagagccgtatctcacactggctgctgcagcagggctcagacctgagt
gaacagaagaagagggccttctaccgctggtaccagctagagaagaccaccccaggtgcc
actctgaacatgcggcccgcccccatgtccctggatgagatagagtggcggcagaccccg
ccccccctgagcacggcggtggggagcttccgtctgcgcagaggcagccgcttcacgtgg
aggaaggagtgccttgccgtcatggagagttacttcaatgagaaccagtacccagatgaa
gccaagagagaggagatcgctaacgcctgcaacgccgtcatccagaagccaggaaagaag
ttgtctgacctggagagagtcacctccctcaaagtctacaactggtttgccaaccgccgc
aaggagatcaagcggcgtgccaacattgaagccacaatcctggagagccatggcatcgac
gtccagagccctggtggccactccaacagtgacgacatagacggcaacgattacgctgag
cagttgtcgttgcagggttgtgacgtcccctactttgagaagaggaccatgacgcggccg
ttcggcttctaccggctggagcccacctctcccacacaggacgacgctgcaggtcacaac
gaccaccaagaccccatctcgctggcagtggagatggcggctgtcaatcacaccatcctg
gctctgtcccgacccggaacggttggagtccccagtgacatcaagaccgaggcactggag
gatgagtga
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integrated database retrieval system
