Clupea harengus (Atlantic herring): 105907307
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Entry
105907307 CDS
T09045
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105907307 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105907307 (cpsf2)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105907307 (cpsf2)
U7-dependent histone pre-mRNA processing factors
105907307 (cpsf2)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
105907307
NCBI-ProteinID:
XP_012691062
Ensembl:
ENSCHAG00000003572
UniProt:
A0A6P3W6G9
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Position
15:17711519..17724236
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AA seq
804 aa
AA seq
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MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDETFSMETIDILKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHNTEDFNLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMVSRPSLLITDSFNATYVQPRRKQRDEQLLTIVMGTLRADGNVLIAVDTA
GRVLELAQLLDQIWRTKDSGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLARVPSPKVVLCSQPDLESGFSRELFLQWCTEAKNSIILTYRTS
PGTLARYLIDNPGEKMLDLEVRKRMKLEGKELDEYLEKEKTKKEAAKKLEQAKEVDVDSS
DESDMEDDLEQPAVVKSKHHDLMMKGEGARKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRPEDFLVPELQATEEEKSKLDMGLANGDEPMDQDLSDVPTKCTSSMETLEIKARVTYID
YEGRSDGDSIKKIINQMKPRQLVIVNGPPDASQDLSESCKAFSGKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCRARDTELAWVDGVLDMRVTLVDTGVLPEEGGGTATAAA
AGTEEGVEDGELVAMETEAAGVGAMVIGVGGSSEAAQQRAMKSLFGEDEKEAGEESDVIP
TLEPLSTNEIPGHQSVFINEPRLSDFKQVLIREGVQAEFVGGVLVCNNLVAVRRTEAGRI
CLEGIQCEDYYKIRELLYQQYAVV
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattatcaagttgacggccctgtcgggggtccaggaggaatccgcactctgt
tacctactacaggtggatgagttccgcttcctgctggactgcggatgggacgagaccttt
tccatggaaaccattgatattttgaaaaggtatgtccaccaggtggatgctgtgctcctg
tcccatcctgatcccatccatttgggggctttgccctacgccgtggggaagcttggcctc
aactgcactatctacgccaccatcccagtctacaagatgggccagatgttcatgtatgac
ctctatcagtctcgtcacaacacagaggacttcaatctcttcacgttggatgacgtggac
tcggcgtttgacaaaatccagcagttgaagtactcgcagatcgtcaatctgaaagggaaa
ggccacggcttgtccatcaccccactgccggctggccacatgattggcggaactatctgg
aagattgtgaaggatggggaagaggagattgtttatgctgtggatttcaaccacaagagg
gagattcatttgaatggctgctcactggagatggtgagccgtccttctctgctcatcact
gactccttcaacgccacctacgtacagccacgacgcaaacagcgggacgagcagcttctc
accattgtcatgggaacactacgtgctgacgggaacgtgctgatcgccgtggatacggcc
gggcgagtgctggagctggctcagctgctggaccaaatctggaggaccaaagactctggg
cttggggtctactccctcgccctgctcaacaacgtcagctataatgtggtggagttctcc
aagtcccaggtggagtggatgagcgacaagctgatgcgctgcttcgaggacaagcgcaac
aaccccttccagttccgtcacctctcgctgtgccacagcctggccgacctggcgcgcgtg
cccagccccaaggtggtgctgtgcagccagccggacctggagtcgggcttctcgcgtgag
ctcttcctccagtggtgcaccgaggccaagaactcaatcatcctcacttaccgcacctcc
cccggcacactggcccgctacctcatcgacaaccctggcgagaagatgctggacctggag
gtgaggaagcgtatgaagctggaggggaaggagctggatgagtatttggagaaggaaaag
acgaagaaagaggctgccaaaaagcttgagcaggcgaaagaggtggacgttgactcgagc
gatgagagcgacatggaggatgacttggagcagcctgcggtggtgaagagcaaacaccac
gacctgatgatgaagggcgagggcgcccgcaagggaagcttcttcaagcaggccaagaag
tcctatcccatgttccccacccacgaggagcgcatcaagtgggacgagtacggagagatc
atcaggcctgaggatttcctggtgcctgagctgcaggccactgaggaggagaagagtaag
ctggatatgggcctggccaacggggacgagcccatggaccaggacctgtccgacgtgccc
accaagtgcacctccagcatggagaccctagagatcaaagcgcgcgtgacttacatcgac
tatgagggtcgctcggacggcgactccatcaagaagatcatcaaccagatgaagccgcgg
cagctggtgatcgtcaacgggccccctgacgccagccaggatctgtcagagtcctgcaag
gccttcagcggcaaggacatcaaggtgtacacgcccaagctgcaggagacggtggatgcc
accagcgagacacacatctaccaagtgcgtctcaaggactccctggtaagctcgctgcag
ttctgccgcgcacgggacacggagctggcctgggtggacggcgtgctggacatgcgggtg
acgctggtggatacgggcgtgctgcccgaggaaggaggtggcaccgccaccgccgctgcc
gcaggcacagaggagggcgtggaggatggcgagttggtcgccatggagacggaggcggcg
ggggtgggggccatggtgattggggtgggcgggtcaagcgaggcagcgcagcagcgggcc
atgaagtcgctgttcggcgaggacgagaaggaggccggcgaggagagcgacgtcatcccc
accctggagccgctgtcgaccaacgagattccagggcaccagtccgtgttcatcaacgag
ccgcggctgtccgacttcaagcaggtgctcatcagggagggggtacaagctgagtttgtg
ggaggagtgctggtctgcaacaacctggtggccgtcaggaggacggaggcaggtaggatc
tgtttggagggcattcagtgtgaagactactataagatacgggagctgctgtatcagcag
tatgctgtggtctag
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