Clupea harengus (Atlantic herring): 105907438
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Entry
105907438 CDS
T09045
Symbol
cltca
Name
(RefSeq) clathrin, heavy chain a (Hc) isoform X1
KO
K04646
clathrin heavy chain
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04142
Lysosome
char04144
Endocytosis
char05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
105907438 (cltca)
04142 Lysosome
105907438 (cltca)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
105907438 (cltca)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105907438 (cltca)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
105907438 (cltca)
Membrane trafficking [BR:
char04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
105907438 (cltca)
Exosome [BR:
char04147
]
Exosomal proteins
Proteins found in most exosomes
105907438 (cltca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
105907438
NCBI-ProteinID:
XP_012691215
Ensembl:
ENSCHAG00000020897
UniProt:
A0A6P3W886
LinkDB
All DBs
Position
8:8069652..8110368
Genome browser
AA seq
1681 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADSAN
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNNLFAAGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRISPDQGLQFAQMLVQD
EEPLADITQIVDVFMEYNLVQQCTSFLLDALKNNRPTEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNYFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLETNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VVQAADKSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLESALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAILTMM
SHPTDAWKEGQFKDIITKVANVELYYKAVQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
TKVKQLPLVKPYLRSVQNHNNKSVNEAVNNLFITEEDYQALRTSIDAYDNFDNITLAQRL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLQWFLE
EEKKECFASCLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDKLETSESL
RKEEEQATETQPIVYGTPQLMLTAGPTSVPVPPQQAYGYGYTGAPAGYAQPPAAAGFGYG
M
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgcctatccgattccaggagcacctgcagctccaaaatttggggata
aatccggccaacattggcttcagcacgctgacgatggagtcggacaagttcatctgcatc
cgtgagaaggtgggcgagcaggcccaggtggtcatcatcgacatggccgactctgccaac
cccatccgcaggcccatctccgctgacagcgccatcatgaaccccgccagcaaagtcatc
gccctgaaagacgccgccaaaacccttcagatctttaacatcgagatgaagagcaagatg
aaggcccacaccatgaccgacgacgtcactttctggaagtggatctccctcaacaccgta
gccctggtgaccgacaacgccgtctaccactggagcatggagggcgactcgcagccagtc
aaagtgttcgaccggcactccagtctggccggctgccagattatcaactaccgcactgac
gccaagcagaaatggctgctcctcatcggcatttcagcccagcaaaaccgtgtggtgggg
gccatgcagctctactccgtggacagaaaggtgtcccagcccatcgagggccacgccgcc
agcttcgctcagttcaagatggagggcaacgcagaggagtccacgctcttctgcttcgcc
gtgaggggccaggcaggaggaaagctgcacatcatcgaggtgggcaccccaccaacggga
aatcagccgtttcccaaaaaggcagtggacgtgttcttccctcccgaggcccagaatgac
ttcccagtggccatgcagatcagctccaaacaggatgtcgtgttcctcatcaccaagtac
ggctacatccacctgtacgacctggagaccggcacctgcatctacatgaaccgcatcagc
ggggagaccatctttgtgactgccccacacgaagccaccgccggcatcatcggtgtcaac
aggaaaggacaggtgctgtctgtgtgtgtggaggaagagaacatcattccctacatcacc
aatgtgcttcagaatccagacctggccctgcgcatggccgtccgcaacaacctggccggt
gccgaggagctgtttgcccgcaagttcaacaacctgtttgcggcaggaaactactccgaa
gctgccaaggtggcagctaacgctcccaaggggatcctgcgcactccagacaccatccgg
cgcttccagagtgttccggcgcagccgggccagacctcgccgctgctccagtacttcggg
atcctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtc
ctgcagcagggacgcaagcagctgctggagaaatggctgaaggaggataagctggagtgc
tccgaggagctgggagacctggtcaagtctgtggaccccacccttgccctcagcgtctac
ctgagggccaacgtccccaacaaggtcatccagtgcttcgccgagaccggccagtttccc
aaaatcgtcctctacgccaagaaggttggctacactccagactggatcttcctgctgagg
aacgtgatgcgcattagcccagaccagggtctgcagttcgcccagatgctggtgcaggac
gaggagccgctggccgacatcacacagattgtagatgtgttcatggagtataacctggtt
cagcagtgcacttcattcctacttgacgcacttaagaacaacaggcccaccgagggtccc
ctgcagacccgcctgctcgagatgaatctgatgcatgcaccacaggtcgctgacgccatc
ctgggcaatcagatgttcaccaattacgacagggcgcacgtggcccagctctgcgagaag
gcaggcctcctccagagggccctagagcactacacagacctgtacgacatcaagcgggcc
gtggtccacacacacctgctcaacccagagtggctggtgaactacttcggctccctgtcg
gtggaggactctctggagtgcttgagggccatgctgtcggcaaacattcgccagaacctg
cagatctgcgtgcaggtggcctccaagtaccacgagcagctctccacccagagcctcacg
gagctcttcgagtccttcaagagctttgagggtctcttctatttcctggggtccattgtg
aacttcagtcaggaccctgaagtgcacttcaaatacatccaggccgcatgcaagaccggc
cagatcaaagaggtggagcgcatctgcagggagagcaactgctacgaccctgagcgcgtc
aagaacttcctcaaggaagccaagctgacagaccagctgccgctcatcattgtgtgcgac
cgcttcgactttgtgcacgacctggtcctctacttgtatcgcaacaacctgcagaagtac
attgagatctacgtacagaaggtgaacccgagccgtctgccagtggtgatcggtggcctt
ctggacgtggactgctctgaggacgtcatcaagaacctgattctggtggtccggggccag
ttctcgactgacgagctggtggcagaagtggagaagaggaacaggctgaagctcctcttg
ccctggctggaggctcgtatccatgagggctgcgaggagccggcgacacacaacgccctc
gccaagatctacatcgacagcaacaacaaccccgagcgcttcctgcgggagaacccctac
tacgacagccgcgtggtgggcaagtactgcgagaagagggacccccacctggcctgtgtc
gcgtacgagaggggacagtgcgaccaggagctcatcaacgtctgcaatgagaactctctc
ttcaagagtctgtcccgctacctggtccgcaggaaggacccggagctgtgggccagcgtt
ctgctggagaccaacccattcaggaggcccctcattgaccaggtggtgcagactgctctg
tctgagactcaggaccccgaggaggtgtccgtcacagtcaaggccttcatgaccgctgac
ctgcctaacgaactcattgaactcctggagaagattgtgctggacaactctgtcttcagt
gaacacaggaacctccagaacctgctgatactgacggctatcaaagcagaccgcactcgt
gtcatggagtacatcaaccgcctggacaactacgacgcccctgacattgccaacatcgcc
atcagcaacgagctctttgaggaagccttcgccattttcaagaagtttgatgtcaacaca
tctgccgtgcaggtcctgattgagcatatcggtaacctggaccgggcgtacgagtttgcc
gagcgctgcaacgagccggccgtgtggagccagctggccaaagcccagctgcagaagggc
ctggtgaaggaggccatcgactcctacatcaaggcagacgacccctccgcctacatggag
gtggtgcaggccgcagataagagcggtaactgggaggacctggtgaagttcttgcagatg
gcccgtaagaaggcccgcgagtcctacgtggagacggagctcatctttgccctggccaag
accaaccggctggctgagctggaagagttcatcaacggaccaaacaatgcccacatccag
caggtcggcgaccgttgttatgacgagaaaatgtacgacgctgccaagcttctgtacaac
aacgtgtccaactttgggcgtctggcctccaccctggtgcacctcggggagtaccaggcg
gctgtggacggagcccgcaaggccaacagcacacgcacatggaaggaggtgtgctttgcc
tgtgtggatgggaaggagttccggttggcccagatgtgtggtctccacattgtggtccat
gctgatgagttggaggagctgatcaactattatcaggaccgcggttactttgaggagttg
atcaccatgttggagtcggcgctgggcctggagcgtgcacacatgggcatgtttacagag
ctggccatcctctactccaaattcaagccgcagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggttttgagggctgcagagcaggcccacctttgggca
gagttggtcttcctgtacgacaagtacgaggagtacgacaatgccatcctcaccatgatg
agccaccccacagacgcctggaaggagggccagttcaaagacatcattaccaaggtggcc
aatgttgagctttactacaaagctgtccagttctacttggaattcaagccgttgttactg
aatgacctgctcatcgtgctgtccccgagactggaccactcccgagcggtcaacttcttc
accaaggtgaagcagctgcctctggttaagccatacctgaggtcagtacagaaccacaat
aacaaatctgtcaacgaagcagtcaacaacctctttatcactgaggaagactaccaggcc
ctgaggacgtccatagacgcctatgacaactttgacaacatcaccctggcccagcggttg
gagaagcacgagctcatcgagttcaggagaatcgctgcctacctcttcaagggcaacaac
cgctggaaacagagtgtggagctctgcaagaaagacaaactgtacaaggatgcgatgcag
tacgcgtccgagtccaaggacacagagctggccgaggagctgctgcagtggttcctggag
gaggagaagaaggagtgctttgcctcctgcctcttcacctgctacgacctgctgcggccc
gacgtggtgctggagacggcctggaggcacaacatcatggacttctccatgccctacttc
atccaggtcatgagggagtacctctccaaggtggacaagctggagacctctgaatcgctc
aggaaagaggaggagcaggccactgaaacacaaccaattgtttatggcacacctcagctg
atgctgaccgcaggacccaccagcgtgcccgtcccccctcagcaggcgtacggctacggc
tacacgggagcaccggccggctacgcccagccccctgcggccgctggcttcggctatggc
atgtaa
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integrated database retrieval system
