Clupea harengus (Atlantic herring): 105907501
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Entry
105907501 CDS
T09045
Symbol
pdlim3a
Name
(RefSeq) PDZ and LIM domain protein 3a
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105907501 (pdlim3a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
char04990
]
105907501 (pdlim3a)
Domain-containing proteins not elsewhere classified [BR:
char04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
105907501 (pdlim3a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
105907501
NCBI-ProteinID:
XP_012691307
Ensembl:
ENSCHAG00000019108
UniProt:
A0A6P3W8D6
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All DBs
Position
22:20685146..20695876
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AA seq
317 aa
AA seq
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MSLNVVLDGPAPWGFRLVGGKDFSQPLSISRINPGSKAAMANLCPGDIIIAIGGMPAENL
MHSEAQNRIKDCGHQLCLTIERPETRLWSPHISEDGKVNPFKINLEAEQQEYQPIGTGHN
RQAQPFVAAANIDDKRQLVSASYNTPIGLYSSGNIQDAMHGQMRGLVPDKPHSPRTLTSI
EESDVYRMLQKDQEQDEPDEPRQSGSFKALQEFVNSDGTRPLLTRTVRAPTTKPAAPTGN
LQKLPVCDKCGNGIVGTVVKARDKFRHPGCFVCSDCDMNLKQQGYFFVEGQLYCETHARA
RTRPPEGHDLVTAYTSA
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgaatgtcgtcctggatggacctgccccatggggcttcagactagtcggggga
aaggacttcagccagcccctgagcatctccaggattaaccctggcagtaaagcagccatg
gcaaacctgtgtcctggtgacatcatcatagcgattggaggcatgcctgctgaaaatctg
atgcacagtgaggcccagaacagaatcaaggattgtggccatcagctgtgtctcactata
gagaggcctgagacaagactgtggtcaccacacatatctgaggatgggaaggtcaaccca
tttaaaatcaacttagaggcagagcaacaggagtatcaaccaataggaacaggccacaac
cgtcaggcccagccctttgtggctgcagcaaacatcgatgacaagcgtcagctggtgagc
gcttcctataacacccccatcggtctctactcttctggcaacatccaggacgccatgcat
ggccagatgaggggcctagtcccggacaaaccccatagcccccgaacgctgacctccatc
gaggagtcggatgtgtaccggatgctgcagaaggaccaggagcaggatgaacccgatgag
ccccgccagtctggctccttcaaggccctgcaggagttcgtcaacagtgacggtactcgt
ccgctgttgaccaggactgtgagggctcccaccactaaacctgccgctccgaccgggaac
ctgcagaaactgcctgtgtgcgacaagtgtggcaacgggatagttgggacagtggtgaaa
gcaagggacaagttccgtcaccctggctgttttgtctgctcagactgtgatatgaacctt
aagcagcaaggctatttcttcgtggagggtcagctgtactgcgagacccatgcccgtgcc
cgcacaagacctccagagggtcacgatcttgtgacagcttacacttctgcgtag
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