Clupea harengus (Atlantic herring): 105907604
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Entry
105907604 CDS
T09045
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105907604 (ddx1)
03016 Transfer RNA biogenesis [BR:
char03016
]
105907604 (ddx1)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105907604 (ddx1)
Spliceosome [BR:
char03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105907604 (ddx1)
Transfer RNA biogenesis [BR:
char03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105907604 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF4882
Motif
Other DBs
NCBI-GeneID:
105907604
NCBI-ProteinID:
XP_031437706
Ensembl:
ENSCHAG00000002054
UniProt:
A0A6P8GJU8
LinkDB
All DBs
Position
15:complement(20485761..20494735)
Genome browser
AA seq
743 aa
AA seq
DB search
MAAFGEMGVMPEIGQAVEDLGWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPL
IQIVYETMKDLQEGKKGRAAVKTGGAVFSKWQMNPYDRSTAFAIGPDGMCCQSREFKEWH
GCRSTQGITKGKYYYEVTCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKSQISFAKNGIDLGLAFTIPQQLKGQAFFASCVLKNAELKF
NFGGESFKNKPAEGFVALDQAPEGHAIKSTQTGSAGSAKVSQVKAMSNAPKAIIIEPSKE
LAEQTHRVVNQFKKFVDDPKVRDLLVIGGVAAKEQLAVLEQGVDIVVGTPGRMEDLISTG
KLSLSQVRFFVLDECDGLLSAGYTDFIMKIYNQIPQVTSDGKRLQVIVCSATLHSFDVKK
LSEKIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDKLWEKLGKNHIRTDEVHAKDNTRP
GTNSPEAWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDKKG
SLLSCVCLHGDRKPNERKTNLERFKKAEVKFLICTDVAARGIDIHGVPFVINVTLPDDKL
NYVHRIGRVGRAERMGLAISLVAMEKEKVWYHVCANRGRGCYNTRLKEDGGCTIWYNEKQ
LLSEVEEHLNCIITQCEPDVKVPLDEFDGKVTYGQRRATGGGQYKGHVDILAPTVQELAT
LEREAQTSFLHLGYLPNQLFKAF
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgtttggtgaaatgggcgttatgccagagatcgggcaagcggttgaggacttg
ggttggctcctcccgactgacatccaggcggagtctattcccttaattctcggaggagga
gacgtcctcatggcggctgaaaccggcagcggcaaaactggcgccttcagtatcccactg
atccagattgtctatgagaccatgaaggacctgcaggaagggaagaagggccgggccgcg
gtcaagactgggggtgcagttttcagtaaatggcagatgaacccttatgaccgaagcaca
gcttttgccatcggtcctgatggtatgtgctgtcagagccgggagtttaaggagtggcac
ggctgccgctcaacccagggcatcactaaaggaaagtactactatgaggtgacatgtcat
gatcagggactgtgcagaattggctggtcaacaagccaggccgcactggatttaggtact
gataaatatggctttggatttggtgggacagggaagaaatccaacaacaagcagtttgac
agctatggagaggagttcaccatgcatgacaccatcgggtgctacctggatctggacaaa
tctcagatctccttcgctaaaaacggtatcgacctgggtctcgccttcaccatcccgcaa
cagcttaaaggccaggccttctttgcttcctgtgtgcttaagaatgctgagctgaagttt
aactttggaggcgagagcttcaagaacaagcctgcagagggctttgtagctctggatcaa
gcacctgagggacacgccattaaatccacccagacagggagtgcagggagtgctaaagtg
agccaagtaaaagccatgagtaacgcccctaaggccatcatcattgagccgtctaaggag
ttggctgagcagacccaccgcgtggtcaaccagttcaagaagtttgtggacgatcctaaa
gtaagagatctgctggtgattggaggtgtggcagccaaggagcagctggcagtactagaa
cagggggtggatattgtagtgggaactcctggtaggatggaggatctcatctctacaggg
aagctcagcctctcccaagtccgctttttcgtactggatgagtgtgatggtcttctctcg
gctggctacacagacttcatcatgaagatctacaaccagatcccccaggtcacctctgat
gggaagagactgcaggtgattgtgtgctctgcgacactgcactccttcgacgtgaaaaag
ctgtcagagaagatcatgcacttccccacctgggtggacttgaagggggaggactctgtc
cccgagaccgtccatcacgtggtggtccccgttaaccccaagacagacaaactgtgggag
aaactgggcaagaatcacatcaggactgatgaggtccacgccaaagataacactcggcca
ggaactaacagcccagaggcgtggtcggaggccattaagatcctgaagggtgaatatacg
gtgcgtgccatcaaggagcacaagatggaccaggccatcatcttctgcagaaccaagatc
gactgcgacaacatggagcagtacttcatccaacagggtggaggacccgataaaaaaggc
agcctgttatcctgtgtctgtctccatggtgaccgaaagccaaacgaacgcaagaccaac
ctggagcgattcaagaaggcggaagtgaagtttctgatctgcacagacgtggcagccagg
ggcatcgacatccatggcgtgcccttcgtgataaatgtcaccctgcctgatgacaaactg
aattacgttcaccgcatcggtcgagtgggtcgagctgagaggatgggtctggccatctca
ctggttgccatggagaaggagaaggtgtggtaccacgtgtgtgcaaacagaggccgagga
tgctacaacaccaggctgaaagaggatggaggatgcaccatctggtacaacgagaagcag
ctgttgtctgaggttgaggagcacctgaactgtatcatcacacagtgtgagcccgacgtt
aaagttcccctggacgaatttgacggcaaggtgacctacggccagcgcagagcaacagga
ggtggccagtataagggtcatgtggatatcttggctcctactgtgcaggagttggccacc
ctggagagagaggctcagacatccttcctacacctgggatacctgcccaaccagctgttc
aaagccttctaa
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