Clupea harengus (Atlantic herring): 105907648
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Entry
105907648 CDS
T09045
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04140
Autophagy - animal
char04148
Efferocytosis
char05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105907648 (vps18)
04148 Efferocytosis
105907648 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
105907648 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105907648 (vps18)
Membrane trafficking [BR:
char04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
105907648 (vps18)
Hops complex
105907648 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf_RING_Vps8
DUF2175
zf-RING_Vps41
zf-RING_16
zf-C3HC4_2
zf-RING_11
zf-C3H2C3
DUF1664
zf-ANAPC11
zf-rbx1
zf-RING_UBOX
TMEM249
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
105907648
NCBI-ProteinID:
XP_012691466
Ensembl:
ENSCHAG00000024213
UniProt:
A0A6P3W758
LinkDB
All DBs
Position
15:4211095..4216090
Genome browser
AA seq
978 aa
AA seq
DB search
MASILDEYEDSQNVRLPAHLHNRLSATNIGITHSGFVNVRLEEEKPIFNKQRIDFSPPEK
INHFAVCSNQLCMSLGKDTILRIDLGKPDQPNQVELGRKDDSKVHKLFLDPTGSHLVISL
TSSECVYLNRNTQKIRSLSRWRGHLIESVGWNKVLGTEVTTGPILVGTSQGIIFEAEISA
SEGSLFNTTPDQYFRQVHSLEEDGKPAPVCCLEVERGMESKYFIIATTRKRLFQFVGKVA
EGSEAQGFSSIFAQNQELLPSFQEFPVNMGYSEITFYTSKLRTCPKAFAWMMGNGVLYGQ
LDYVRPDSLLSDVQVWEYTPDIDFNFNKPISIVLTQFHFLLLLPDRVKAICTLNGQVVHE
DVFPDKFGTLKKMIKDPVGGMVWIYTEKAVFRYHIQREARDVWQMYMNMNKFDLAKEYCR
ERPECMDMVLAKEADHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKK
LNNLKPSEKTQITLLATWLTELYLNRLGLLESDDRKNTLLQHTRDEFRRFLSSSKHKECF
YNNRDTIYDLLASHGNVDDMVYFSVIMQDYERVISHHCQHDDYSAALEVLSKHCDEKLFY
KFSPVLMQHIPKKVVDAWIQMGNRLDPKKLIPALVNYSQMGSTQQINETIRYMEFCVYQL
EVKEEAIHNYLLSLYAKYKPDSLLWYLEQAGTQASEINYDLKYALRLCAEHGYLQACVLV
YKIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNC
LSSCDLLKIEDILPFFPDFVTIDHFKEAICNSLEEYNQHIEGLKQEMEEATESAKRIRED
ILEMRNKYGVVESQEKCATCDFPLLNRPFYLFLCGHMYHYDCLFQEVSTHLYTHEQTKLE
ELQKKLAGVTLTTKSRHRPKEDDTVSLGMNHVSREQIKSDIDDIIASECVYCGERMIKAI
DKPFIDPEKFEEEKSTWL
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggcctctattcttgatgaatatgaagactctcagaacgttcgtctccctgctcatctg
cataaccgcttgtcggcaacgaacattgggataacacactcgggatttgtgaatgtacgg
ctggaggaagagaaacccatattcaacaaacaaaggattgatttttctcctcctgaaaag
ataaaccattttgcagtatgcagcaaccagctttgcatgagtttgggaaaagacaccatt
cttagaattgatctaggaaaaccagatcagccgaaccaagtagaattgggccgtaaagat
gacagcaaagtgcacaaacttttcctcgacccaacaggttctcacctggtaatcagcctt
acctcaagtgaatgtgtctatctgaatagaaacacccagaagatccgaagcctttcaagg
tggaggggtcatctaattgaaagtgttggttggaacaaagttctgggaactgaggtgacg
acagggcccattcttgtgggcaccagccaaggcattatctttgaagctgagatctctgcc
tcagagggtagcttattcaacactaccccagatcagtacttcaggcaggtccactctctg
gaggaggatgggaagccggcacctgtctgttgtcttgaggttgaacgtggtatggagtcc
aagtacttcatcattgccacgactcggaagcgtctctttcagtttgtggggaaggtggca
gagggatctgaggcgcagggctttagttccatctttgctcaaaaccaggagcttcttccc
agtttccaggagttccctgtcaacatgggctacagtgaaatcaccttttatacctccaaa
cttcgcacatgtcccaaagcctttgcctggatgatggggaatggtgtgttatatggccag
ctggactatgtcagacctgactcactccttagtgatgtccaagtttgggagtacacaccg
gatattgacttcaacttcaacaagcctatatccattgtgctcacccagtttcatttcctg
ctcctccttccagacagagtgaaagccatttgcaccttaaatggacaagtggtacacgag
gatgtatttcctgataaatttggcaccttgaagaagatgatcaaagaccctgtagggggc
atggtgtggatttatacagagaaggctgtgtttcggtatcacatccagagggaagcaaga
gatgtctggcagatgtacatgaacatgaacaagtttgatttggccaaggaatactgtcgg
gaacgtcccgagtgcatggacatggtccttgccaaagaggcagatcactgctttcagaat
aagcgttacctggagagcgctaaatgctatgctctaacccagaattactttgaggagatt
gcgctcaagtttattgaagcaaagcaggaagaagccctgaaagagttcctcttgaaaaaa
ctgaacaatctgaagccaagtgagaagactcagattaccttgcttgctacctggctgaca
gagctttacctcaatcgacttggccttctcgagtctgatgaccgcaagaatactctcctc
caacacactcgtgatgagttcaggcgcttcctcagcagcagcaaacacaaagaatgtttc
tacaacaaccgagacactatctatgatctgctggccagtcatggcaatgtagatgacatg
gtgtacttttcagtcatcatgcaagactacgagagagtgatctcacaccactgtcaacat
gatgactacagtgcagctttggaagttctatcgaaacattgtgatgagaagctattctac
aagttctctcctgtcttaatgcagcacatacccaagaaggtggtggatgcctggatccaa
atgggaaacagacttgatcccaagaagctcattccagctctggtgaactacagtcagatg
gggagtactcagcagatcaatgagaccattcgttacatggaattctgtgtatatcagctt
gaagtaaaagaagaagccatccacaattatttactgtctctatatgcaaaatataagcct
gactcactcttatggtacctagagcaggctggcacacaagcttcagaaatcaactatgat
ttgaaatatgctctacggttgtgtgccgaacatggatatctacaggcatgcgtccttgtc
tacaagattatggagctgtacgaagaggctgtggatttagcattgcaggtggatgtggac
ctggccaagtcctgtgcagaccttccagaggatgatgaagagttgaggaagaagctgtgg
ctgaaaattgctcggcatgttgtgcaggaagagaaggatgtcaagaaggctatgaactgc
ctctccagctgtgaccttttgaagattgaggacatcttgccattctttccagattttgtt
accattgaccactttaaagaggccatatgcaattcgttggaggagtataatcagcacatc
gaagggctgaaacaggagatggaggaggctacagagagcgctaagcgtatacgagaggac
atcctggagatgaggaacaagtatggtgtggtcgagtcccaggagaaatgtgcgacttgt
gactttcctctgctcaaccgtcccttctatctttttctgtgtggccatatgtaccactat
gactgcctctttcaggaggttagtacgcacctctacacacacgagcagaccaagctagag
gagctacagaagaagcttgcaggtgttaccttaacaacaaagtctcgccatcggccaaag
gaagatgatacagtcagtttgggaatgaaccatgtgagccgtgaacagatcaagtctgat
attgatgatatcattgcatctgagtgtgtgtactgtggtgagcggatgatcaaggctatt
gataagccgtttattgatcctgagaagtttgaagaggagaagtcaacctggttatga
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