Clupea harengus (Atlantic herring): 105907727 Help Entry 105907727         CDS       T09045                                  Symbol skiv2l Name (RefSeq) helicase SKI2W   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism char  Clupea harengus (Atlantic herring) Pathway char03018   RNA degradation Brite KEGG Orthology (KO) [BR:char00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     105907727 (skiv2l)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:char03019]     105907727 (skiv2l) Enzymes [BR:char01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      105907727 (skiv2l) Messenger RNA biogenesis [BR:char03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      105907727 (skiv2l)   mRNA degradation factors    3'-5' decay     Ski complex      105907727 (skiv2l) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel Helicase_C DEXQc_Suv3 ResIII MTR4-like_stalk DUF3516 HTH_23 NirdL-like_HTH Motif Other DBs NCBI-GeneID:  105907727 NCBI-ProteinID:  XP_012691553 Ensembl:  ENSCHAG00000012839 UniProt:  A0A6P3W7B7 LinkDB All DBs Position 19:complement(25703506..25725426) Genome browser AA seq 1248 aa AA seqDB search MERIELPPLGPADLPLSLLEVGCSGKFELLTRPLPSHQPLHPLTTLPHGLPPFSVDLQAE VEKRFLSDPAWLPIHDTDAAFQKFLKLTKRGKHLDSLLQCPPTPLHSGLSVVRDPTTGML LDFTEVPLENTGLCAKNSLSLQRAPGPPSESLRGSNTNYPFMPAGMEELTLEQINKKSEL EENIDFENDLLIMPPGLKTGMDFSAKEAKTTTKGEVNLMTLLSTFDDIMDDAPDGEEKEG KPATVETPKLPRTNSLEDLGIKEGPVSSSPPPATAAGKKEVKGEEEDTKKWAVPVDITSP CEDFYKRIPDPAFKWPFELDLFQKQAVLKLEAHDSVFVAAHTSAGKTVVAEYAIALSQKH MTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQINPEASCLIMTTEILRSMLYNGSE VIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFSEWIGRMKK RHIYVISTLKRPVPLEHYLYTGNSTKTQKELFLLIDAAGNFLTKGYYAAVDAKKERTSKH AQSFGTKNTSQNTTPNQDKSVWLTLLNFLSQRQQTPVVAFTFSRTRCDENARSLGTLDLT SATEKSEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKKGIGVHHSGILPILKEVIEMLFS RGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDAT GTVIILCKTGVHDMGDLHVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSE SHRDTQAQEKRITQLKETLSTLPPMDVEGQLSDLLSYYHTITELRITSQALQEAVMDSVS GLKALSVGRVVVVSNSLHLNALGVILQVSNDAVNRTFTTLIICEKGNEEPTGDTMNTSAP PHLYNTALFTPEGPCSHTVQKLKSQDILGITVKALKVIPERIIDNYSKRQQPRFRMDPPG QAISTATQELLRLAEANPNGVATFDPVNDLHLKSVEVVEGVMRQRVLRDCLKDFKCIHSP TFSEQFARVQERMRVQEEMDKLLFLVSDQSLSLLPEYHQRIKVLQTLQYIDASGAVQLKG RVACQISSHEMLLTELLFENTLSPLAPEESAALLSCLIFTQKTQVDPHITNTLQEGIKQV LCVAQKIGDLQRECGIAQSAEDFVSQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVVR CIQRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH NT seq 3747 nt NT seq  +upstreamnt  +downstreamnt atggagagaatagagttgcccccactgggccctgcagacctgcctctttctttgctagag gtgggatgctctgggaaatttgaactcctcacacgccctctcccctctcaccagcctcta catccactgaccacactgccccatggactgcctccgttcagtgtggacttacaggcagag gtggagaagcgtttcctgagtgacccagcatggttacccatccatgacacagatgctgct ttccagaagtttctcaaactgaccaagagagggaagcatttggactctcttctccaatgt ccccctaccccactgcactctggtctgtccgtggtgagagatccaaccacaggaatgctg ctggacttcacagaggtgccattggagaacacaggtctgtgtgccaagaactctctctcc ctgcaaagggccccaggaccaccctcagagagcctgcgagggagcaacaccaactacccc ttcatgccggctggcatggaggaactgactctggaacagataaacaagaagtcggagctg gaagagaatattgactttgagaacgatttgctaattatgcctcctggactgaaaacggga atggacttcagtgctaaagaggccaaaacaacaacaaaaggggaagtgaacctgatgacc ctcttatcgacttttgatgacatcatggatgatgctcccgatggagaggagaaagaggga aaaccagcaactgttgagacaccaaaacttccccgaacaaatagtctggaagacctcgga attaaggagggtcctgtgtcctcttctcctcctcctgccacggctgccgggaagaaagag gtcaagggtgaagaggaagacacaaagaagtgggccgtacctgtggatatcacctcaccg tgcgaggacttctacaaacggatccctgatccggctttcaagtggccgtttgaactggac ctgtttcagaagcaggctgtgctcaaactggaggcccatgactctgtgtttgttgcagca cacacctcagctggcaagactgtggtggcagagtacgctattgcactctcccagaaacac atgactaggacaatttacacctcccccatcaaggcactgtccaatcagaagttcagggac ttcaagaccacatttggagatgtgggactgctgacaggagatgtgcagatcaaccccgag gcctcctgcctcatcatgaccacggagatcctcaggtccatgctgtacaacggctctgaa gtgattcgggacctggagtgggtgatctttgatgaagttcattacattaatgatgctgag agaggagtggtgtgggaggaagtcttgatcatgttgcccgagcatgttagcattatcctg cttagtgccacagtgcccaacgcattggagttcagtgagtggatcgggcgcatgaagaag aggcacatctatgtcatcagcaccctgaagcggcccgttcccctggagcactacctctac acaggaaacagcaccaagactcagaaagagctcttcctcttgatagatgctgctgggaac ttcctcactaaagggtattatgcagccgtggatgccaaaaaagagcgcacaagcaaacat gcccagtctttcggcaccaagaacacatctcagaacaccacacccaaccaggacaagtcc gtgtggcttacactgctcaacttcctttcccagcggcagcagactccggtcgtggccttc acattctcacggacgcgctgtgatgaaaacgcccgctctctgggcacgctggacctgacc agtgccactgagaagagtgagatccactcgttcttccagaagagcctgagtcgtctgagg ggaggcgaccgccagctgccacagatcctgctgatgagggacctgctgaagaagggcatc ggtgtgcaccacagtggcatcctgccaatcctcaaggaggtcatcgagatgctcttctca cggggactcgtaaaggttctgtttgctacagagaccttcgccatgggtgtgaacatgcca gccaggaccgtggtgtttgactccatccgcaaacatgacggcaccggttttaggaatctg ctgcctggtgagtatattcagatggcgggtcgtgcaggcaggagaggtctggacgccaca ggcaccgtcatcatcctgtgtaagactggtgtccacgacatgggagacctgcacgtcatg atgctgggtaagcccaccgtgctgcagtctcagttccgcctcacgtacaccatgatcctc aacctgctgcgggtggaggccctcagggtcacggacatgatgaggcgcagcttctccgag agccacagggacacgcaggctcaagagaagaggatcactcagctgaaagaaactctctca actctccctcctatggatgtggagggtcagctgtcggacctgctttcctactaccacact atcaccgagcttcgcattaccagtcaggctctgcaggaagcggtgatggactccgtgtct gggctgaaagctctctctgtaggacgggtcgtcgtcgtcagcaactccctgcacctcaac gccctcggcgtcatcttacaagtgtctaatgatgcagtcaatcgcaccttcaccaccctc atcatctgcgagaagggcaacgaggagcctacaggagacaccatgaacaccagcgccccg cctcacctctacaatacagcactgttcactccagagggcccctgcagtcacacggtgcag aagctgaagtcacaggacatcttaggcatcacagtcaaggccctcaaggtgatcccagag cggatcattgacaactacagcaagagacagcagccacgcttcagaatggaccctccgggc caggctatatccacagcaacacaagagctcctgcgattggctgaggccaacccaaacggt gtggcgacctttgaccctgtgaatgacctgcacctgaagagtgtggaggtggtggagggg gtgatgaggcagcgtgtgctacgggactgtcttaaagacttcaagtgcatccattcaccc accttctcagaacagtttgcccgtgtccaggagcgaatgcgggttcaggaagagatggat aaactcctcttcctcgtgtccgatcagtctctctccctcctgccagagtaccaccagagg attaaggttcttcagacactgcagtacatcgatgcgagcggggcggtgcagctgaagggg cgtgtggcctgtcagatctccagccatgagatgcttctcacggagctgctgtttgaaaac acactcagccctctggcccccgaggagagcgccgccctgctgtcctgcctgatcttcaca cagaagacccaggtggacccccacatcaccaatacacttcaggagggcatcaagcaagtg ctgtgtgtcgctcagaagattggtgacctgcagagggaatgtgggatagctcagtccgct gaggatttcgtgtctcagttcaaattcggcctgactgaggtggtgtactgctgggccaga ggcatgccctttgcagagatcgcccagctgacggacgtgcaggagggcaccgtggtgcgc tgcatccagcggctggacgaggtgctgaaggaggtgcggcaggcggccaggatcgtggga gactcagtgctggggagcaagatggagagggcttcactcgccatacgcagggacatcgtc ttcacagcctctctgtacactcactga

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