Clupea harengus (Atlantic herring): 105907796
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Entry
105907796 CDS
T09045
Name
(RefSeq) LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily V member 1-like
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
105907796
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105907796
Ion channels [BR:
char04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
105907796
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Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
YVC1_C
Ank_5
Ank_3
DUF4231
Phage_Gp84
T4SS_AnkD
PKD_channel
Motif
Other DBs
NCBI-GeneID:
105907796
NCBI-ProteinID:
XP_012691633
Ensembl:
ENSCHAG00000024964
UniProt:
A0A6P3W8S1
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Position
9:11694127..11699667
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AA seq
736 aa
AA seq
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MLMAPLSMWGLDTQRVPMDTHYQSEFGFLSDTRIPKQDVSYRVFTIQPLFDAAAAGNVYK
LKGLLKYLQHTSKHLTDWDLRDPTNGKTVLLKALLNLRNGQNDIIEVLLDIAEATGDLYA
LVNAAYTDSFYKGQSALHIAIERRSLHFVKLLVQKGANVQAKACGKFFQFKTRPGFYFGE
LPLSLAACTNQLNIVKFLLKNPYQRVDITDKDSHGNTVLHALVTIADNSPENTEFVTVMY
DDILKRAGQLYPKIKLEDIENDQGLTPIKLAAKTGKIGLFKHMVRREFLDEESIHLSRKF
TEWVYGPVYSSLYDLASLDSYEKNSVLEIIVYGCENPNRHDMLQIEPLHSLLEEKWHIFA
RRIFWFNFIVYVVYLGIFTSVAFFRKEGEPPFPVQHVPSDYFRLAGQIISLLGAIYFFFK
GISDFRRKRPKLQTLLVDGYSEFLFLLQAALLLFSAVLYTSGRREYVGFLVLSLALSWIN
LLYFFRGSKHMGIYGVMIQRMIISDISRFLFVYIVFLLGFSAAVVTLIEEPPHSSSAWRT
ATAAPETVLVEAMRACARRHSFNNIYFTTLELFKFTIGMGDLEFTEQYQYKEVFFILLIS
YIVLTYILLLNMLIALMSETVERISRDSKSIWKLQRALTILDLERSLPHWLRKNLRSGVV
KELGEQTGEDTRRCFSLEEVNWSKWHTDLGIITKDPGSCDIKPYNRSRRESFVRVVSTLR
RNEIVKGLTHADDKSS
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgctgatggcccccctcagcatgtggggcctggacacacagagggtccccatggatact
cactatcagtctgagtttggatttctgagtgatacaaggatcccaaaacaggatgtgtca
tacagagtgtttacaatccagccactgttcgatgcagcagcagctggaaatgtctataaa
ctaaaggggctgctgaaatacctccagcacacctcgaaacacctcacagactgggacctc
cgagatcctaccaatgggaaaactgttctcctgaaggccctcttgaacctcaggaatggg
caaaatgacatcattgaggtgcttctggacatcgcagaggcaactggagatctgtatgct
ttggtcaatgcagcatacaccgacagcttttacaaaggacagagtgccctgcatatcgcc
attgagagacgaagcctgcactttgttaagctgcttgtgcagaaaggagcaaatgtacag
gccaaagcctgtgggaaattcttccagttcaaaaccagacctggattttactttggtgaa
cttccgctgtcattggcagcttgcactaatcagttgaacattgtaaaattcctcttgaag
aacccttaccaaagggtggacatcacagacaaggactcccatggaaacacagtgctgcat
gctctagtaaccatagcagacaactctcctgaaaacacagagtttgtcacagtgatgtac
gacgacattctgaaaagggcaggccagctctaccccaaaatcaaactggaagacattgag
aatgaccaaggtctgactcccatcaaactggctgccaaaactggcaagattgggctgttc
aaacacatggtgagacgagagttcctggatgaggagagcatccacctgtcgagaaagttc
acagagtgggtgtatggccctgtctactcctccctctacgacctggcctctctggactcc
tacgagaagaactccgtgttagagatcattgtctacggctgcgagaaccctaaccgccat
gatatgcttcaaatagagcctctacacagtctattggaggagaaatggcatatttttgcc
cggcgaatattttggttcaacttcatcgtctatgttgtatacctggggatattcacttcc
gtggcttttttcagaaaagagggagagccaccgtttcccgttcaacatgtgccatctgac
tattttcgtctcgctggacaaataatcagcctccttggtgccatttactttttcttcaaa
gggatatcagacttcaggagaaagaggccaaagctacaaacattactggtggacggctac
agtgaatttctttttttactgcaggcagcgctcctgctgttctcagcagtgctgtacacc
agcgggcgaagggagtatgtgggcttcctggtgctctccctggctctcagctggatcaac
ctcctctacttcttcaggggctccaagcacatgggcatctacggcgttatgatacagagg
atgatcatcagtgatatttcacgctttctttttgtttacatcgtcttccttttaggattt
tcagcagctgttgtgactctcattgaggaacccccccactcatcaagcgcctggagaaca
gcaactgctgctccagagacagtgctggtggaggccatgcgggcctgtgcacgcagacac
tctttcaacaacatctacttcaccaccctggagctcttcaagttcaccatcggcatgggc
gacctggagttcaccgagcagtaccagtacaaggaggtgttcttcatcctgctcatctcg
tacatcgtgctcacctacatcctcctgctcaacatgctcatcgccctcatgagtgagact
gtggagaggatatccagagacagcaagagcatctggaaactgcagagagccctgaccatc
ctggacctggagcggagcctacctcactggctcaggaagaacctgcgctctggggtggtg
aaggagctgggggaacaaaccggcgaggacacccgccgctgtttcagtttggaggaggtg
aactggagcaagtggcacacggacctgggcattatcactaaagacccagggagctgtgac
atcaagccctacaacaggtcacgcagagagagctttgtacgagtcgtgtctactctaaga
aggaatgagattgtgaaaggcctgacgcatgcagatgacaagagctcctga
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