Clupea harengus (Atlantic herring): 105907820
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Entry
105907820 CDS
T09045
Symbol
cltcb
Name
(RefSeq) clathrin, heavy chain b (Hc) isoform X1
KO
K04646
clathrin heavy chain
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04142
Lysosome
char04144
Endocytosis
char05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
105907820 (cltcb)
04142 Lysosome
105907820 (cltcb)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
105907820 (cltcb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105907820 (cltcb)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
105907820 (cltcb)
Membrane trafficking [BR:
char04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
105907820 (cltcb)
Exosome [BR:
char04147
]
Exosomal proteins
Proteins found in most exosomes
105907820 (cltcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
105907820
NCBI-ProteinID:
XP_012691660
Ensembl:
ENSCHAG00000007042
UniProt:
A0A6P3W7H0
LinkDB
All DBs
Position
9:12026819..12046174
Genome browser
AA seq
1684 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICVREKVGEQAQVVIIDLSDANT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATSGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNNLFAGGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQAGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPTEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNYFGALS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQTLIELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPF
YDSRVVGKYCEKRDPHLACVAYERGTCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLETNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKELVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQGRGYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
SKVKQLPLVKPYLRSVQTHNNMPVNEALNNLFITEEDYQALRASIDAYDNFDNITLAQGL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLQWFLE
EGKRECFASCLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDK
LDASESLRKQEEQDTEAQPIVYGTPQLMLTAGTNVAVPPQQSYGYGYTAPAGFVQPQPGF
GYGM
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatcctacccatccgctttcaggagcatttgcagctccagaatttgggaatc
aatcccgccaacattggcttcagcaccctgactatggagtcagataaattcatttgtgtc
cgggagaaagttggcgagcaggcacaggtagtgatcatcgacttgagtgacgccaatact
cccatccgcaggcccatttcagcagacagtgccatcatgaacccggccagcaaagttatt
gcacttaaagacgccgcaaaaacacttcagatttttaacatcgaaatgaagagcaaaatg
aaggcccacaccatgactgatgatgtcactttctggaagtggatctccctcaatactgta
gcacttgtgacagacaacgctgtttaccattggagcatggaaggagactctcagccaatc
aaagtgttcgacagacactccagtttagcaggctgtcaaatcatcaactaccgcactgat
gccaaacagaaatggctgcttctcattggaatttctgcacagcaaaaccgtgtagtgggt
gcaatgcagctgtactctgtggacagaaaggtctctcagcctattgaaggccacgcggca
gggtttgcccagttcaaaatggagggaaatgcagaagaatcaaccctgttctgctttgct
gtgcgaggacaagcagggggaaagctacacatcattgaggttggaacaccacctacaggc
aaccagccatttccaaagaaagctgtagatgttttcttccctccagaggcccagaatgac
ttccctgtcgctatgcagataagctccaagcaggatgttgtctttctcatcacaaagtat
ggctacatccacctgtatgaccttgagacgggcacctgtatctacatgaacaggatcagt
ggagagaccatctttgtcacagccccccatgaggccacttctggcatcattggagtcaac
cggaaaggacaggtgctgtctgtgtgtgtggaggaggagaacatcattccctacatcacc
aatgtgctgcagaacccagacctggccctgcgcatggccgtgcgcaacaacctggccggc
gctgaggagcttttcgcccgcaagttcaacaacctcttcgctggcggcaactactcagag
gctgctaaagtggccgccaatgcccccaagggaattctgcggaccccggacaccatccga
cggttccaaagcgttccggcccaggcaggccagacctcgccgctgctccagtactttggg
atcctgctggaccagggccagctgaacaagtttgagtctctggagctgtgcaggcccgtg
ctgcagcagggacgcaagcagctgctggagaagtggctgaaggaggataagcttgagtgc
tctgaggagcttggagatctggtgaagtcggtggaccccactttggctcttagcgtctac
ctgagggccaacgtccccaacaaagtcatccagtgcttcgcagagactgggcagttccag
aagatcgtcctctatgccaaaaaggtgggctacactccagactggatcttcctgctgagg
aacgtgatgcgcatcagcccggagcagggcctgcagttctctcagatgctggtgcaggac
gaggagccgctggctgacatcacacagattgtggatgtgtttatggagtacaacctgatc
cagcagtgcacctccttcctgctggacgccctgaagaataaccggcccactgagggaccc
ctgcagacacgcctactggagatgaacctgatgcacgctccacaggttgccgacgccatc
ctcgggaaccagatgttcactcattatgaccgcgcccatgtggcccagttgtgcgagaag
gcggggctgctgcagagagcgctggagcactacactgacctgtatgacatcaagcgtgct
gtggtgcacactcacttgctcaacccagagtggctggtgaactactttggtgccctgtcg
gtggaggactctctggagtgcttgagggccatgctgtcggccaacatccggcagaacctg
cagatctgcgtgcaggtggcctccaagtaccacgagcagctctccacccagaccctcatt
gagctcttcgagtccttcaagagctttgagggtctcttctacttcctgggctcgattgtg
aactttagccaggacccagaggttcacttcaagtacatccaggcagcatgcaaaactgga
cagattaaagaagtggaaagaatctgcagagagagcaactgctatgaccctgaacgtgtg
aagaacttccttaaggaagccaagttgactgatcagctgcccctgattattgtgtgtgac
cgctttgactttgtccatgacctggtgctctacctgtaccgcaacaccctgcagaagtac
attgagatctacgttcagaaggtgaaccccagccgcctgccggtagtgatcggaggtctg
ctagacgttgactgctctgaggatgtcatcaagaacctcatcctggtggtgcggggccag
ttctccaccgacgagctggtggccgaggtggagaagaggaacagactgaagctcctgctg
ccttggctggaagcccgcatccacgagggctgtgaggagcctgctacccataatgctctg
gccaagatctacattgacagcaacaacaacccggagcgcttcctgcgagagaaccccttc
tacgacagccgcgtggtggggaagtactgtgagaagagggatccccacctggcctgtgtg
gcctacgagcgaggaacgtgtgatcaggaactcattaacgtctgcaatgagaactccctg
ttcaagagcctgtcccggtacctggtgcgccgtaaggacccggagctgtgggccagtgtg
ctactggaaactaaccccttcaggaggcccctcatcgaccaggtcgttcagactgccctg
tctgagacccaagatccagaggaggtgtctgttactgtcaaggccttcatgactgctgac
ctgcccaatgaactcatcgagcttctggagaagattgttttggataactctgtcttcagt
gaacacaggaaccttcagaacctcctgattctcacggctatcaaggcagaccgcacccgc
gtgatggaatacatcaaccgcctggacaactacgatgcccctgatattgctaacatcgcc
atcagcaatgagctcttcgaggaggcctttgccattttccggaagtttgatgtcaacaca
tcagctgtgcaggttctcatcgagcacatcgggaacctggaccgcgcctacgaatttgcc
gagcgctgcaacgagccggccgtgtggagccagctggccaaagcccagctgcagaaggaa
ctggtgaaggaggccattgactcctacatcaaagctgacgacccctccgcctacatggag
gttggacaggctgcagctcagagcggaaactgggaggacctggtgaagttcctgcagatg
gctcgtaagaaggcccgcgagtcctacgtggagacggagctcatcttcgccctggccaag
accaaccggctggctgagctggaggagttcatcaacggacctaacaacgctcacattcag
caggttggagacagatgctacgatgagaagatgtacgatgctgccaagttgctctacaat
aacgtgtctaactttggccgcctggcctccactctggtgcacctgggcgagtatcaggca
gccgtggacggagcacgcaaggccaacagcacaaggacttggaaggaggtctgcttcgcc
tgtgtggatgggaaggagttccgcctggcccagatgtgtgggctgcacattgtggtccat
gctgacgaactggaggaactcatcaattattaccagggccggggctactttgaagagctg
atcaccatgctggaggcggcactcggcctggagcgcgctcacatgggcatgttcaccgag
ctggccatcctctactccaagttcaaaccacagaagatgagggagcacctggagctcttc
tggtcccgcgtcaacattccaaaggttctgagagctgcagagcaggcccatctctgggca
gagctggtgttcctgtatgacaagtacgaggagtatgacaacgccatcatcaccatgatg
aaccaccccacagacgcctggaaagagggacagttcaaagacatcatcaccaaggtagcc
aatgtggagctgtactacaaagccacccagttctatctggaattcaagcccttgttactg
aatgacctgctaatagtgttatccccaagactcgatcacagccgagccgtcaacttcttc
agcaaggttaagcagctgcctctggtaaaaccgtacctgaggtcagtacagacccataac
aacatgccagtcaatgaggcactcaataatctcttcatcactgaggaggattatcaggct
ctgcgcgcatccatcgacgcctatgacaactttgacaacatcactctagctcaaggtctt
gagaagcacgaactcattgagttcaggagaatcgcagcatacctgttcaagggcaacaac
cgctggaagcagagcgtcgaactttgcaagaaggacaagctctacaaggatgccatgcag
tacgcgtccgaatcgaaggacactgaactggctgaggagctgctgcagtggttcctggag
gagggtaagagggagtgctttgcctcctgcctcttcacctgctacgacctgctgcggccc
gacgtggtgctggagacggcctggaggcacaacatcatggacttctccatgccctacttc
atccaggtcatgagggagtacctgtctaaggttgatgcaattaaagaaaaggtggacaag
ctggacgcctccgagtcgttacggaaacaggaggagcaggacactgaggcgcagcccatt
gtttacggtactccccagctgatgcttaccgctggcaccaacgtggccgtcccgccccag
cagtcctatggttacggctacactgcgcctgctggctttgtccagcctcagcctggcttt
ggctacggcatgtaa
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integrated database retrieval system
