Clupea harengus (Atlantic herring): 105907874
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Entry
105907874 CDS
T09045
Symbol
smarce1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X2
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105907874 (smarce1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105907874 (smarce1)
03036 Chromosome and associated proteins [BR:
char03036
]
105907874 (smarce1)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105907874 (smarce1)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
105907874 (smarce1)
PBAF complex
105907874 (smarce1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
GCN5L1
PHM7_cyt
Motif
Other DBs
NCBI-GeneID:
105907874
NCBI-ProteinID:
XP_012691728
Ensembl:
ENSCHAG00000003698
UniProt:
A0A6P3W8X3
LinkDB
All DBs
Position
1:complement(4455137..4462885)
Genome browser
AA seq
489 aa
AA seq
DB search
MSSKNPYKRPSYAPPPAPAPTTQLPTTPGFVGYNPYSHLAYNNYRLGGNSGGNNRNSSGI
TVPKPPKPPDKPLMPYMRYSRKVSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLSDEEKQ
DYLNEYEAEKIEYNDSLKAYHNSPAYLAYVNAKNRAEAALEEENRQRQSRLDKGEPYMSI
QPAEDPDDYDDGFSMKHTAAARFQRNHRLISDILSEIVVPDVRSVVTTARMQVLKRQVQS
LMVHQRKLEAELLQIEDRHQDKKRRFLETTESFNTELKRLCGLKVEVDMEKLAAEMAAAE
EAARRRAEEREKEAAEQAEKAAAAAASAAATAAAAAAAAAAAAATAQQEEQQQQQQQQQQ
QQQPQPQQPTTPASATPPQANSSPEQSPESKPVEDKPTPMETDEAPSETAESQPAEAEER
ATPAPENPTPPEPAEAATLEGTTDSTASSESSSSSSSSTATTTTNTTGPGEPIPPEPPAP
EERPPPPLQ
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtaagaatccttataaacggccatcctatgccccaccccctgccccagccccc
accacacaattgcccaccacccctgggtttgtgggctacaacccatacagccatctggcc
tacaacaactacaggctgggagggaactccggcggaaacaacaggaattcctcagggatc
actgtccccaagccgcccaaaccgccagacaagccactgatgccctacatgcggtacagc
cggaaggtaagcaggaaggtttgggaccaggtcaaggcttctaatcctgatttgaagcta
tgggagattgggaagatcattggtggcatgtggagggacctctcggatgaggagaagcag
gactacttgaacgagtacgaagctgagaagatcgagtacaatgactccttgaaggcctac
cacaactccccggcgtacttggcctacgtcaacgccaagaaccgggcagaggccgctctt
gaggaggagaaccgacagaggcagtcacgcctggacaaaggggagccctacatgagcatc
cagcccgcagaggaccccgatgactacgacgacggcttctccatgaagcacacagctgct
gcccgcttccagagaaaccaccgcctcatcagtgacatcctcagtgaaattgtggtgcca
gacgttcgctcggttgtcactacggctcgcatgcaggtcctcaagcgtcaggtccagtcc
ctcatggtgcaccagaggaagctggaagcagagctgctgcagattgaggatcgacatcag
gacaaaaagaggaggttcctggagaccactgagtctttcaacactgaactcaaacggctg
tgcggtctgaaggtggaggtggacatggagaagctggctgcggagatggcggcggccgag
gaggcggcgcgccgtcgggcggaggagagggagaaggaggcggccgagcaggcggagaaa
gcagcggccgcagcagcatcagcggcagcaacagcagcggcggcggctgcagcggcggcg
gctgcagctgcaactgctcagcaggaggaacagcagcaacagcaacagcagcagcaacaa
caacaacaaccgcaaccgcagcagccgaccacccccgcttcagccacgccaccacaggcc
aactcctctcctgagcagagcccagagagcaagccggtggaggacaagcctacacctatg
gagacagatgaggccccgagtgagaccgctgagagtcaaccggccgaggcagaagagagg
gcaactcctgccccagagaaccccaccccccctgaaccggcggaggcggccacgcttgag
gggacgactgacagcaccgcctcatctgaaagcagcagcagcagcagcagcagcaccgcc
accaccaccaccaacaccactggaccaggagaacccatccctcccgagcctccggcccca
gaggagcggccgcccccccctcttcaataa
DBGET
integrated database retrieval system
