Clupea harengus (Atlantic herring): 105907877
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Entry
105907877 CDS
T09045
Symbol
mgrn1b
Name
(RefSeq) E3 ubiquitin-protein ligase MGRN1b isoform X3
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04120
Ubiquitin mediated proteolysis
char04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105907877 (mgrn1b)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
105907877 (mgrn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105907877 (mgrn1b)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105907877 (mgrn1b)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105907877 (mgrn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-RING_5
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
105907877
NCBI-ProteinID:
XP_012691736
Ensembl:
ENSCHAG00000001830
UniProt:
A0A6P3W806
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All DBs
Position
1:4216018..4226242
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AA seq
551 aa
AA seq
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MLICWQEGVSSLHLPSSPIINKNKMGSILSRRIAGVEDIDIQANSAYRFPPKSGNYFASH
FFMGGEKFDTPHPEGYLFGENMDLNFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLR
LVRYKDDADSPTEEEAKPKVLYGVEFTFDSDARVAITIYCQAFEEFSNGMAVYTPKVPTL
VSETVHHKRGVSQQFSLPSFKIDFTEWKEEDLNFDLDRGVFPIVIQAVVDEGDDCIGHAH
VLLAAFERHMDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNEC
VVCLSDLRDTLILPCRHLCLCNSCADTLRYQANNCPICRLPFRALLQIRAVRKKSGTLSP
VSFSPVLAQNMDHDEHSSTDSVPPGFEPISLLEAMNGLRPVSPGIPSAPLYDEINFSGSV
GGDSRPHSPSELSGDSALQKGKVSKSPDSTLRSPSSPIQEEDEEKLSELSDAQPHPTLSS
SPVPTEQATATEDIPLQSITPDDEEGLMSEQEILQDCSSEHSSLTKTDSDPPGDLSLPAL
GPEACSIGMEE
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgctaatttgctggcaagagggggtttcttcattgcatctgccatccagcccgattata
aacaagaacaaaatgggctcaatacttagtcggaggatcgcgggtgttgaggatattgac
atccaggctaactcggcatacagattcccacctaaatcagggaactattttgccagtcac
tttttcatgggaggggagaagtttgacacacctcatccagaaggctacctgtttggagaa
aatatggatttaaatttccttggaaatcgtcctgtacagttcccttatgttacgccagca
cctcatgagccagttaaaactctgaggagtctcgtcaacatcaggaaagactccctgcgt
cttgtaaggtacaaagatgatgctgacagtcccacagaagaagaggccaagcccaaggtt
ctgtatggggttgagttcaccttcgattcagatgcacgagtggccatcaccatctactgc
caggcatttgaagaattcagcaatggaatggctgtgtacaccccaaaggttcccacattg
gtttctgagacggtgcaccacaaaagaggagtgagccagcagttttctttgccgtccttc
aaaattgatttcactgaatggaaggaggaggatctaaattttgatctggacagaggtgtc
ttccccatagtaatccaagctgtggtagatgagggggatgattgcattggacatgcacat
gtattgctggcggcctttgagaggcacatggacggcagcttctctgtgaaacctttaaag
cagaaacaaattgttgaccgagtgagctatttactgcaggagatctacgggatcgagaac
aaaaataaccaagagaccaagccttcagatgacgagaacagtgacaacagcaacgagtgt
gtggtgtgtctgtcggacctgcgcgacaccctcatcttgccctgcaggcacctgtgcctc
tgcaactcctgtgcggacactctgcgctaccaggccaacaactgtcccatctgccgcctg
ccattcagagccctgctgcagatccgcgctgtgaggaagaagtctggaactctttcccca
gtctcctttagccctgtgctagctcagaacatggaccacgatgaacactcaagcacagac
tccgttcctcctggatttgagcccatctcgctgctggaggcgatgaatggcctgcggccc
gtatctccagggatcccctccgcccccctctatgatgagatcaacttctccggcagcgta
ggcggggatagcaggccacacagcccttcggagctatcgggggacagcgctctgcagaag
ggcaaagtcagcaagtcacctgacagcactctccggtccccatcctcacccatccaggag
gaggatgaagagaaactgtcggagctgtccgacgcccagcctcacccaaccctgtccagc
agcccagtgcccacagagcaggccactgcaacagaggatatcccactccagtccatcacg
cctgacgatgaggaaggtctgatgtctgaacaggagatcttacaagactgcagcagcgag
cacagcagcctgaccaagacggatagtgaccctccaggagacctttccctcccagctcta
ggtcctgaggcctgctctattggtatggaagagtaa
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