Clupea harengus (Atlantic herring): 105908239
Help
Entry
105908239 CDS
T09045
Symbol
hmbox1a
Name
(RefSeq) homeobox-containing protein 1a isoform X3
KO
K24885
homeobox-containing protein 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105908239 (hmbox1a)
Transcription factors [BR:
char03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
105908239 (hmbox1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
DUF494
HTH_37
HTH_31
HTH_24
TFIIA
Motif
Other DBs
NCBI-GeneID:
105908239
NCBI-ProteinID:
XP_012692169
UniProt:
A0A6P3W8K7
LinkDB
All DBs
Position
14:complement(18085358..18106728)
Genome browser
AA seq
584 aa
AA seq
DB search
MSHYTDEPRYTIEQIDLLQRLRRTGMTKQEILHALDTLERLDREHSDKFGRRPAPSSTLA
NNGTPALANSIAAAGNNNNNNNSSASAGIAASGANTSSLASANCNASIAIAAATTTTSTA
TQTAYRGAALSPSSANNYDTSPPPLPLTLPPPSMPIPLPVPTSAQNGRGDSLAVMANGKL
SPPRYPVSNAPPRPYGYEPTEEELDIEDKVEELMRRDSAIIKEEIKAFLGNRRISQAVVA
QVTGISQSRISHWLLQQGSDLSEQKKRAFFRWYQLEKTTPGATLAMRPAPLALEDIVEWR
QTPPPLGSTPGSFRLRRGSRFTWRKECLAVMESYFNDNQYPDEAKREEIANACNAVIQKP
GKKLSDLERVTSLKVYNWFANRRKEIKRRANIAILDTHGIDVQSPGGHSNSDDIDGSDYP
EQVASDQALGGRAVARAFGFSRGGLSSPTQVPTLLPSWLSPWPSPGRVGLGVQRGAAAGG
APLGRLGGGLQGQQQQQQQQQQQQQQQPQQPPQQQQASSEGPRLTAVSWSPSPLQEDGTG
HGGEHQDPITLAVEMAAVNHSILALAHHATTGSGDIKTEVLDDD
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtctcattacacagacgagcctcgctacaccatcgagcagatcgacctgctccagcgg
ctgcgtcgcacgggcatgaccaagcaggagatcctgcacgcgctggacacgctggagcgg
ctagaccgcgagcactccgacaagttcggccgccggccggccccttcctccacgctcgcc
aacaacggcacgccggcgctcgccaacagcatcgccgccgccggcaacaacaacaacaac
aacaacagcagcgcttccgctggcatcgccgcgtccggcgccaacacctccagcctcgcc
tccgccaactgtaatgcctcaatcgccatcgccgcagcaaccaccacgacctccacggcc
acccagacggcctaccggggcgccgccctctcgccatcctcagctaacaactacgacacc
tcgcccccgccgctgccgctcacgctgccgcccccctccatgcccatccccctgccggtg
cccacctccgcgcagaacgggcgcggggacagcctggcagtcatggccaacgggaagctc
tctccgccccgctaccccgtctccaacgccccgccacggccctacgggtatgagcccacg
gaggaagaactggacattgaagacaaggtggaggaactcatgagaagggacagtgccata
atcaaggaggaaattaaagcctttctgggaaaccggcggatctctcaggcagtggtggct
caggtcacaggtatcagtcagagtcgtatctcccactggctgttgcagcagggctctgac
ctcagcgaacagaagaaacgcgccttcttccgctggtaccagctggagaagaccacgcct
ggtgccaccctggccatgcgccccgccccactggccttggaggacatcgtggagtggcga
caaactccgcccccgttgggctccacccccggtagcttccgcctgcgcaggggcagtcgc
ttcacctggaggaaagagtgcctggccgtgatggagagctactttaatgataatcagtac
ccagacgaagccaaaagggaggagattgccaatgcctgcaacgccgtcattcagaagcca
gggaaaaagctgtcggacctcgagagggtcacgtccctcaaagtttacaactggttcgcc
aaccgccggaaggagatcaagcggagagccaacatagcaatcctggacactcatgggata
gatgtgcagagccctggaggtcactccaacagcgacgacatcgatggcagcgactaccct
gagcaggtggcctcggatcaagctctgggcgggagagcagtggccagagcgtttggcttc
agcagaggtggcctgtcatctcccactcaggtccccactctgctccccagctggctctcc
ccctggcccagcccgggcagggtgggcctgggagtccagaggggggcagctgcaggtggc
gcccccttagggcggctcgggggagggctgcaggggcaacaacaacaacaacaacaacaa
caacagcagcagcagcagcagccgcagcagccacctcagcagcagcaggcgtcatcagag
ggccccagactgaccgctgtctcctggtctccctcccccctccaggaggatggcacgggc
cacggcggggagcaccaggaccccatcacgctggcagtggagatggcagccgtcaaccac
tccatcctggcgctcgcccatcacgccaccacgggcagcggggacatcaagactgaggtg
ctggatgacgactga
DBGET
integrated database retrieval system
