Clupea harengus (Atlantic herring): 105908493
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Entry
105908493 CDS
T09045
Symbol
ptbp1a
Name
(RefSeq) polypyrimidine tract-binding protein 1a isoform X2
KO
K13218
polypyrimidine tract-binding protein 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105908493 (ptbp1a)
03041 Spliceosome [BR:
char03041
]
105908493 (ptbp1a)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
105908493 (ptbp1a)
Spliceosome [BR:
char03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
105908493 (ptbp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
105908493
NCBI-ProteinID:
XP_012692467
Ensembl:
ENSCHAG00000020314
UniProt:
A0A6P3W8Q7
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All DBs
Position
22:8634437..8646925
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AA seq
567 aa
AA seq
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MDGRLETDLYPLGSSYVTELDGVHDIAVGTKRGSDALFSSCISNGPYIMTSGAANGNDSK
KFKGDIRSPGIPSRVIHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEE
CAQTMVSYYSSVTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGSMPMG
GVMDNAGSQSPVLRLIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALVQYADG
MTAQHAKMSLDGQNIYNACCTLRVSFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPPMDH
QAMAAAAFSAPGLISASPYAGAHGFPPQFALQQAGLSLSPGALAQLGMSGGAAAAAAAAG
RMGMGGMGPGGHSVLLVSNLNPERVTPQCLFILFGVYGDVMRVKILFNKKENALVQMADA
TQAQLAMSHLNQQKMHGKPIRVTLSKHTTVQLPREGHEDQGLTKDYGNSPLHRFKKPGSK
NYSNIFPPSSTLHLSNIPPSVVEEDLRGLFVSAGYMVKAFKFFQKDRKMALIQMGLVDEA
IEALIEFHNHDLGENHHLRVSFSKSTI
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggacgggcggttagagactgatttgtatcctctcggatccagttacgtcactgaacta
gacggtgtccatgatattgcagttggcacaaagaggggatctgacgcactcttttcctcc
tgcatatctaacggaccatatatcatgacctcaggagcagcaaatggaaatgacagcaag
aagtttaaaggggacatccgtagcccaggcattccatcacgtgtcatccacgtgcgtaag
cttcccaacgacatcaatgaggccgaggtgatctctttgggactgccctttggcaaagta
accaacctcctgatgctcaaagggaagaaccaggcctttctggaaatgaacacagaagag
tgtgcccagacgatggtcagctactattcctcagtcacgccagtcatccgtaaccacccc
attttcatgcagtactcaaaccacaaggagctgaagactgacaactcaccaaaccaagtg
agggcgcaggcggcgttgcaggcagtgaatgccgtgcagactggcagcatgcccatggga
ggagtgatggacaacgcaggcagccagagcccggtgctccgactcatcgtggagaacctc
ttctacccagtcaccctggacgtgcttcatcagatcttctccaagtttggaaccgttcta
aagatcatcactttcaccaaaaacaaccagtttcaagcactggtccagtacgcagatggc
atgactgcacagcacgccaagatgtctttagacggacagaacatctacaatgcctgctgc
acattgcgcgttagcttctccaaactcaccagcctgaatgtgaaatacaacaatgacaag
agccgtgactacacccgcccagacctgcccactggtgacagccagccgcccatggaccac
caggccatggcagccgctgctttcagtgcacctggccttatttccgcctctccctacgcc
ggagctcatggcttcccacctcaatttgccctccagcaggcaggtctgtccctgtcccct
ggagctctagcccagctggggatgtctggtggtgctgctgccgccgctgctgccgctggg
cgtatgggcatgggtggcatgggtcccggtggtcacagcgtcctgctggtcagcaacctc
aaccctgagcgtgttacgccccaatgcctctttattcttttcggtgtgtacggtgatgtc
atgagggtgaagattctgttcaacaagaaggagaatgccctggtgcagatggcagatgcc
acacaggctcagctggccatgagccacctgaaccagcagaagatgcatgggaagcccatc
cgtgtgaccctgtccaagcacaccaccgtccagctgccccgtgagggccacgaggaccag
ggcctcaccaaggactacggcaattccccgctgcaccgcttcaagaagcccggctccaag
aactactccaacatcttccctccctcctccaccctgcacctctccaacatcccaccatcg
gtggttgaggaggaccttagagggttgtttgttagcgcgggctacatggtcaaggccttc
aagttcttccagaaggaccgcaagatggctctgatccagatgggcttggtggatgaggcc
atcgaggccctcatcgagttccataaccacgaccttggcgagaaccaccacctcagagtc
tccttctccaagtccaccatctaa
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