Clupea harengus (Atlantic herring): 105908765 Help Entry 105908765         CDS       T09045                                  Symbol prpf19 Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism char  Clupea harengus (Atlantic herring) Pathway char03040   Spliceosome char04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:char00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     105908765 (prpf19)   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     105908765 (prpf19)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:char03041]     105908765 (prpf19)    04121 Ubiquitin system [BR:char04121]     105908765 (prpf19)    03400 DNA repair and recombination proteins [BR:char03400]     105908765 (prpf19) Enzymes [BR:char01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      105908765 (prpf19) Spliceosome [BR:char03041]  Complex B   Other components    Prp19 complex     105908765 (prpf19)  Complex C    Prp19-CDC5 complex     105908765 (prpf19) Ubiquitin system [BR:char04121]  Ubiquitin ligases (E3)   U-box type E3    105908765 (prpf19) DNA repair and recombination proteins [BR:char03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     105908765 (prpf19) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 WD40 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Prp19 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_EIPR1 PEP5_VPS11_N Beta-prop_WDR19_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_SPT8 U-box Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 PROPPIN Beta-prop_DCAF12 Beta-prop_LRRK2 Cytochrom_D1 zf-Nse Cep57_MT_bd ATG16 Motif Other DBs NCBI-GeneID:  105908765 NCBI-ProteinID:  XP_031424651 Ensembl:  ENSCHAG00000005687 UniProt:  A0A6P8FM08 LinkDB All DBs Position 6:3828513..3835539 Genome browser AA seq 504 aa AA seqDB search MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGADPINGQPLSEEQLIDIKVSHP IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL TKEVTAAREALATLKPQAGLVVPQAAPASQPAVGAGGEPMEVSEQVGMTAEIIQKLQDKA TVLTTERKKRGKTVPEELVRSEDLGKYRQVASHVGLHSASIPGILCLDLCPSDTNKVLTG GADKNVVVFDRREEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDTTIRVWSVTGGNCVQ VVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDVQTGRVLTKVTDETAGCALTCAQFHP DGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTAIAFSENGYYLATGAQDSSLKLWD LRKLKNFKTIALDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFGDHTGLVTG VAFGEHAQFLSSTGMDRSLKFYSL NT seq 1515 nt NT seq  +upstreamnt  +downstreamnt atgtctttggtttgcgcaatctccaatgaggttcctgagcacccctgcgtttcaccggtc tccaaccaagtgtttgagcgccgcttgattgagaaatatatcgcggaaaacggcgcagac cctataaacgggcagccgctgtccgaagagcagttgattgacatcaaggtttcccatcct atccgtcccaaggctccctcagcaactagtattcctgcaatcctcaagtcgctacaggat gaatgggatgcggtgatgctgcacagtttcactctgcgccagcagctgcagaccacccgc caggagctctctcacgccctctaccagcatgacgccgcctgcagagtcatcgctcgcctc accaaagaggtcacagcagccagagaggctctggccacactcaaaccccaagctggattg gttgttccacaggctgctcctgcctcccagccagctgtgggtgcgggtggagagcctatg gaggttagcgaacaggttggcatgacagcggagatcatacagaagctgcaagacaaggcc accgtgctgacaacagagagaaagaagaggggaaaaaccgtcccagaggagctggtccgc tccgaggatcttggcaaatacagacaagtggcctcgcatgttgggctgcatagtgccagt atcccaggcattctctgtctggacctctgtccctcagataccaacaaagtactcaccggt ggagctgataagaacgtggtggtgtttgaccgtcgggaggagcagattgtggccaccctc aaaggtcacaccaaaaaggtcacctctgtcatctaccatccttctcagtcggtggtgttc tcagcttctcccgacaccaccatccgggtgtggtctgtcaccgggggcaactgtgtgcag gtggtgcgtgctcacgaggcgagcgtgactggcctctccctgcacgccactggagactac ctgctgagctcctctgaagaccagtactgggccttctctgatgtccagaccggtcgtgtt ctgactaaagtgaccgacgaaaccgcaggatgtgctctgacgtgcgctcagttccaccct gacggtctgatctttggcacgggcaccgcggactctcagatcaagatctgggatctgaag gagcgcaccaatgtggccaacttccctggacactctggccccgtcactgccatcgccttc tctgagaatgggtattacctggccacaggtgctcaggacagctctctgaagctttgggat ttgaggaaactgaagaactttaagactattgctttggataacaattatgaggtgaagtcc ctggtcttcgaccagagtggtacctacctggctgtgggtggatccgacatcagagtgtac atctgcaagcagtggtctgaggtccttaacttcggtgaccatactggactagtgaccggg gtggctttcggtgagcacgcccagttcctctcctctactggaatggacagaagcctgaag ttctacagtctgtag

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