Clupea harengus (Atlantic herring): 105908816
Help
Entry
105908816 CDS
T09045
Symbol
si:cabz01101003.1
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD isoform X1
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04217
Necroptosis
char04622
RIG-I-like receptor signaling pathway
char04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
105908816 (si:cabz01101003.1)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
105908816 (si:cabz01101003.1)
04625 C-type lectin receptor signaling pathway
105908816 (si:cabz01101003.1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
105908816 (si:cabz01101003.1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105908816 (si:cabz01101003.1)
Enzymes [BR:
char01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
105908816 (si:cabz01101003.1)
Peptidases and inhibitors [BR:
char01002
]
Cysteine peptidases
Family C67
105908816 (si:cabz01101003.1)
Ubiquitin system [BR:
char04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
105908816 (si:cabz01101003.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
UCH
Motif
Other DBs
NCBI-GeneID:
105908816
NCBI-ProteinID:
XP_012692833
Ensembl:
ENSCHAG00000012761
UniProt:
A0A6P3WAA9
LinkDB
All DBs
Position
18:13950076..13969141
Genome browser
AA seq
987 aa
AA seq
DB search
MSGVARHQSSRRRRPPKMFLVASDLKIQDHLDGTIRVLRGYLCQEQETLERNGKVEQLWV
KVLDNGWMVKIERHVLMEIPADQAGLLEPVTEPEARLKLHNKPHRLQRLAVLPLGSPVTV
VMSHGGLAEAELRYRGPLTRGSSAVYFGVQLKGWAAGKGTSTGTYKGHQLFTCPEACALF
VPASQLTLRRFSRETDAAERQPSNTSAPHNPPSAQPPTSHQTVSILSRTAESIPGPASPT
APALQQGQRVIFTQDEAIQTGRVVFCGALPGRSSGGVFVGLLLDSPVGSWDGTYKNHTLC
SISSPQFGHLLPLSKVTPVESRPQKSPPPVVNPKSALKPPSLPPPKTALVPVLPPYPKPA
LKPVNAPKPISPTHPAVPATVPSPPLYHAKVALQPPPKPSTSPPSLPSVTSKPPPPPPAN
LKPSIKPPLPSTPFYPSTDQARGSNGLPGPPSPPPLLEEVEYEYEYEAGAGMELEVGSMV
EVNEPPQYGVIRWIGRIGSIPELVAGVELDQEITAGTDGSYLGERYFRCPSNKGLFVKLR
SCRRDSRFPAPETPINQVERCNSIAFAEWGSERVEEHTPPLLGLEAREHYHGWKKGIQGH
LNSCYLDATLFSLFSCCSSADSVLFCPPGPQDGPRSRAAQDLLRCEIVNPLRRYGYVCAS
KTMALRKLLKAETTDAGFTNQEKDPEEFFNKLFQLLRVEPLLRIRSMNHQPQECHLYQLF
PPSTAPSLSSPPALSPSLSLAPLSPIPLSPPADHMRVASVQALLEASFIHSGLKFAEAPS
CLPLLMPRFGKDFKMFDAILPSLTLDITDLLDETLRQCSICQSLAHWECLQCYEDQDITP
GRLKQFCHTCNTQVHTHKKRASHHPERVRTPDCPWAEQWEGSLGGSRQQLELFAVTCIET
SHYVSFVRHGPQPTDWLFFDSMADREGGENGFNVPQVRACPEVGRYLSLSEEELSRLDPA
SLKDTVRRLLCDSYMCLYHCPQISLYK
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggagtcgcacgccatcaaagtagtagaagacggcgtccccccaaaatgtttctg
gtggcgtccgacctgaagatccaggaccacctggatggaaccattcgggtgctacggggc
tacctgtgccaggagcaagaaaccctggaaaggaatggcaaagtggagcagttgtgggta
aaagtattagataacggctggatggttaagattgagaggcacgtgctcatggagataccc
gccgaccaggctggcctattggagccagtgacggagccggaagcccgcctgaaacttcac
aacaaacctcatcggctgcagcgattggctgtcctgcctttggggtcgcccgtaaccgta
gtgatgagccacggtggcctggccgaggcagagcttagatacaggggacccctgactaga
gggagttcggccgtatactttggggtgcaactgaagggttgggcagcgggtaagggcacc
agtaccggcacctataaaggccaccagctcttcacctgccccgaggcatgtgccctcttc
gtccctgccagccagctcaccctgcggcgcttctcccgcgagactgacgccgccgaacgc
cagccctctaacaccagcgctcctcacaacccccccagcgcacaaccccccacctcccac
cagacggtgagcattctttcacgcacggctgagtccatccctgggccagcctctcccacc
gctccggcgctgcagcagggccagcgggtgatattcacccaggacgaggccattcagacg
gggagggtggtgttctgtggggccctgcctggcaggagctctggaggtgttttcgtgggc
ttgcttctggacagcccggtcggttcgtgggatggcacgtataagaaccatacgctctgc
tccatctcttcccctcagtttggtcatctcctccccctctccaaagtcactccagtggaa
tccagaccacagaagtcaccccctcccgtggttaaccccaaatctgccctgaaaccccct
tccctaccccccccaaaaactgccctggtgcctgtgctgcccccgtaccctaaaccggct
ttaaagcccgtaaatgcccccaaacccatctccccaactcaccccgctgtcccagccacc
gtgccatcccctcccctataccacgcaaaagtagcccttcagccccccccaaaaccatcc
acctcccctccgtccctcccgagcgtcacctccaaacccccgcctcctccccctgccaac
ctgaagccctccatcaagccgccgctgccgtcgacgccgttttacccgagtactgaccag
gcgcgtggctccaacggcctcccggggccgccctcccctccaccgctactggaggaggtg
gagtacgagtacgagtatgaggcgggcgccgggatggagctggaggtgggctccatggtg
gaggtcaacgagccgccgcagtacggcgtcatccgctggatcggacgcatcggcagcatc
cccgagctcgtcgcgggagtggagctggaccaggagataaccgccggcacagacggtagt
tacctgggcgagcgctacttccggtgcccgtccaataagggtctgtttgtgaagctccgc
agctgtaggcgggactccagattccccgcccccgagacgcccatcaaccaagtggaacgc
tgcaactccatagcatttgcagagtggggcagtgagcgcgttgaggagcacacccctccc
ctgctgggcctggaggccagagaacactaccatggctggaagaagggcatccagggacac
ctcaactcctgctacctggatgccacgctcttcagcctgttctcctgctgtagttctgca
gactctgtgctcttctgtccccccgggccgcaggatggcccccgcagtcgcgcggctcag
gacctgctacgctgcgaaatcgtcaaccccctgcgcaggtatgggtatgtctgtgccagc
aaaactatggcactacgcaaactactaaaggcagaaacgacagatgctggcttcaccaat
caggagaaagaccctgaggagttcttcaacaagcttttccagctcttgcgggtggagcct
ctcctaaggatccggtcgatgaaccatcagcctcaggagtgtcacctctaccagctcttc
cctccctccaccgctccctctctatcctctcctcctgctctctctccctccctctctctg
gcccccctctcccccatccccctctcccctccggcggatcacatgagagtggcgagtgtg
caggcgctactggaggcctccttcatccactcagggctcaagttcgctgaggctccctct
tgcctgcctctgctcatgcccaggtttgggaaggacttcaagatgttcgacgccatcctg
ccctcactaactctggacatcacagacctgctggatgagaccctgcggcagtgtagcatc
tgtcagtcactggcgcactgggagtgtctgcagtgctatgaggaccaggatatcacgccc
ggccgcctcaaacagttctgccacacctgcaacactcaggtgcacacccataagaagcgc
gcgtcgcaccaccctgagcgtgtgcggacccctgactgcccgtgggcggagcagtgggag
gggtctctgggcggcagccgccagcagctcgagctgtttgccgtcacctgcattgagacc
agccactacgtcagcttcgtgcgccatggaccccagcccacggactggctcttcttcgac
agcatggccgacagggaaggtggggagaatggcttcaatgtgcctcaagtgagggcgtgt
ccagaggtaggccgctacctcagcctatcggaagaggagttgagccggctagaccctgcc
tccctgaaggacacagtccgccggctgctttgcgactcttacatgtgtctctaccactgc
ccccagatcagtctctacaagtga
DBGET
integrated database retrieval system
