Clupea harengus (Atlantic herring): 105908937
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Entry
105908937 CDS
T09045
Name
(RefSeq) DENN domain-containing protein 4B
KO
K20163
DENN domain-containing protein 4
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105908937
Membrane trafficking [BR:
char04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
105908937
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
PPR_long
DUF2464
PPR
Motif
Other DBs
NCBI-GeneID:
105908937
NCBI-ProteinID:
XP_012692960
Ensembl:
ENSCHAG00000012345
UniProt:
A0A6P3W9P3
LinkDB
All DBs
Position
11:complement(24632397..24664487)
Genome browser
AA seq
1505 aa
AA seq
DB search
MTEEKCPQLVDYFVVAGLAEGSVPMDEEGGGQQKGGGGGGGGGGGRSVEPVTDVVVIARG
LGEDVPEGFTCIEKTQGGNPAELSAGLINNPHMFLCYRRGHDKPPIVELGVLYEGKEPSK
SGWDVIDHTPYGRSASLTTGSPTIHRTFLTYRRAPDSQALNTLGVTDISLLMPSKGELAP
HTFSRVDKNLNTGMWGPALYLCYKKAVAKANALVYEAGLISRYPEEDLESFPLPDSVPVF
CLPMGVTVESWPLNTKYQLPVFSTFVLTSASGDKVYGAAIQFYEAYPREALSERQRVRLG
LVSVVDRRPITSRSVQVKKSVCVLSHWPFFTVFQKFLTFVYRYSISGPHVLPLEKHISSF
MHNVPFPSPQRPRILVQLSPYDNLLLCQPVSSPLPLSGASFLKLLQNLGPENACMLLLAA
LTEQKLLLHSLRPDVLTSVCEALVSMTFPLRWQCPYIPLCPLCLAGMLNAPMPFIVGMHS
SYFDLNDPPSDVVCVDLDTNTIFQLEDKKPLSWRSLPRKHGKILLNSLSNLNKTLEKICT
PGQEEATLEFLLTDYDLIYGRQKQLELEIQEAFLRFMSCLLKGYRTYLLPITQAPSDRTT
DCSSLFNLQGFLKSRDRTQQKFYNQLTKTQMFAQFIEECSFVSDRHVSLEFFDECVQKVD
VEKPEEVHLVDLDETHSGEHTVFIMPPEEPQEADGSECLAQYSYETFPILQLELFDRPQD
QLRVPTKGSAPSSPAPRRTKQEIKLAQKRAQKYASVPDMWSKCLLGHCYGLWFIYLPTFV
RAESTKVPALHIAYEVLKHMETRKVVLPDEVCYRILMQLCGQYGQPVLAVRVLLEMKKAG
ITPNTITYGYYNKAVLESKWPSTNQGGRLRWAKLRNVLMAVAQFRQPIKHRQKSDSISSR
SDVILSKPRPHSALVRQSSWSGLSESSSHESLNSLLPKSNSLSSMRSSTDHDKLPRKALL
RNTGADNPAARKPPAGPQEAPPGLPPSGVLVRRSQVCLSTFYKDCAETPEADPHCKCQPG
ERESRSTDARESLSRKTLDENYNHVSSPRSGLAGKLQQLLTPTRHRAFVRRAASVDERRP
GGSNSGPGHRAAERRQARKAQVTETLLKAKERLVNATSESSLSVGSDIDLTEPPGLNFTL
RKSWDPTPEGAGLEVLMSSCSLCRSCNSLIYDEEIMAGWTSDDSNLNSSCPFCSATFVPL
LNAEICDLGPVSSLERSTLNAEDEVESAMRPPGGQESSERPLHNGLSDDSTSETSGYSES
SGSNNTLDSSSVNGPPLVTVAYLSPLVLRKELESLLENEGEAVLSQPQLLDSHSIIFWNL
VWYFQRLGLPSNLLQLIRSSQLGAHLTQTIENPAVRVRLLWDTLTPDIDFWPPLYVLWRI
HSGVHMLRYHSWRRHNHPFTLSFLEEVLRWVGMNEVHKAVTLILDTIAKQPGNPKTQRSL
YREILFLTLAAMGKDHVAAFDKKYKAAYSRLSGSLGREELRRKRAQPPSPKAVDCRRCFL
MPLEC
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atgactgaggaaaaatgccctcagctggtggactactttgtggtggcgggcctggcggag
ggctcagtccccatggacgaggagggaggtgggcagcagaagggaggaggaggaggagga
ggaggaggcggaggccgctctgtggagcccgtcaccgacgtggtggtgattgcgcggggg
ctgggcgaggacgtgcccgagggcttcacctgcatcgagaagacccagggtggcaacccg
gccgagctcagtgctggcctcatcaacaaccctcacatgttcctgtgctaccgccggggc
cacgacaagccccccatcgtggagctgggagtcctttatgagggtaaggagccctccaag
tctggttgggatgtgattgaccacaccccatacggtcgctcggccagcctgaccacgggc
agccccaccatccaccgcaccttcctcacgtaccgccgagcaccggactcccaggccctg
aacacactgggcgtcactgacatctccctactcatgcccagcaaaggggagttggcaccg
cacaccttcagcagggtggacaagaacctgaacacaggcatgtggggtccagcattatac
ctgtgttacaagaaagctgttgccaaagccaatgctctggtctatgaggcaggtctaatc
agccgatacccagaggaggacctggaatccttccctctgccagactctgtgccggtgttt
tgtctgcctatgggcgtgacggtggagagttggcccctcaacaccaagtaccagcttcct
gtcttctccacgtttgtcctcaccagtgcctctggagacaaggtgtacggcgccgccatc
cagttctacgaggcgtacccgcgggaggcgctgtcggagcggcaacgcgtgcgcctgggc
ctggtgagcgtggtggaccggcggcccatcaccagccgctcggtgcaggtgaagaagagc
gtctgcgtgctctcccactggcccttcttcaccgtcttccagaagtttctcaccttcgtc
taccgctactccatctccggtccgcacgtgctgcccctggaaaagcacatctccagcttc
atgcacaacgtgcccttcccctccccccagcgcccacgcatccttgtgcagctgtcccct
tatgacaaccttctactgtgccaaccagtctcatctcccctccctctcagcggtgccagt
ttcctgaagctgctgcagaacctgggccctgagaacgcctgtatgctgctgctggccgcg
ctgactgaacagaagctgctgctgcactctctgcggcccgacgtgctcacctccgtctgc
gaggccctggtgtccatgacttttcctctccgctggcagtgcccctacatcccgttgtgc
ccgctgtgtctcgccggcatgctcaacgcccccatgcccttcattgtgggcatgcattcc
agctattttgacctcaatgaccccccctctgatgtggtgtgtgtggacctggacaccaac
accatattccaattggaggataagaagccattgtcatggagatcacttcccaggaaacat
ggcaagatcttactgaactcactctccaacttgaacaagacgttagagaagatctgcacg
ccgggccaggaggaggccacgctggagttcctgctgacggactacgacctgatctacggg
cggcagaagcagctggagctggagatccaggaggccttcctgcgcttcatgagctgcctg
ctcaagggctaccgcacctacctgctgcccatcacccaggccccgtcagaccgcactacc
gactgcagctccctcttcaacctgcaggggtttcttaagtctcgggaccgtacccagcag
aagttctacaaccagctgaccaaaacccagatgttcgcccagttcatagaggagtgctca
tttgtcagtgaccgccacgtcagtctggaattcttcgatgagtgtgtacaaaaggtggat
gtggagaagccggaggaggtgcatctggtggacctggatgaaacccacagtggggagcac
accgtcttcatcatgccaccggaggagcctcaggaggcggacggctccgagtgcctggcc
cagtacagctacgagacgttccccatcctgcagctagagctgtttgaccggccacaggac
cagctgcgcgtcccaaccaaaggaagtgctcccagcagccccgcgccacgccgcaccaaa
caggagataaagctggcccagaagcgggcgcagaagtacgcctcggtgcccgacatgtgg
tccaagtgcctgctgggccactgctacggcctctggttcatctacctgcccacctttgtg
cgggcagagagcaccaaagtgccagccctgcacatcgcctacgaggtgctcaaacacatg
gagactcgcaaggtggtgcttcctgatgaggtgtgttatcggatcctgatgcagctgtgt
gggcagtacggccagcctgtgcttgcagtgcgggtgcttttggagatgaagaaggccggc
ataacacccaacaccatcacctatggctactacaacaaggctgtgttggagagcaagtgg
ccctctaccaatcagggtggccgtctgcgctgggcaaagttacgcaatgtgctgatggct
gtagctcagttcaggcagccaatcaaacatcggcaaaagagtgactctataagctccaga
tcagatgtcatcctctccaagccccgcccgcactctgctttggttcgccagtccagctgg
agtggcttgagtgaaagctccagccacgaatcgctgaatagcttgctccccaagagcaac
agccttagcagcatgcgctcctccactgaccatgacaagctgccccggaaagcactgctc
cggaacactggcgcggataaccctgctgcccgcaaaccccctgccggcccccaggaggct
cctccagggctgcccccgtctggtgtcctggtgcggcgcagtcaggtgtgcctgtccacc
ttctacaaggactgcgccgagacgcccgaagccgacccacactgcaagtgccagccaggg
gagagggagagcaggtccactgatgcgagagagagcttgagcagaaagacgctggatgag
aactacaaccacgtgtcatccccgagaagcggcctggcggggaagctgcagcagctgctg
acgccgacgcggcaccgggcgttcgtgcggcgtgcggccagtgtagacgagcggcgcccg
gggggcagtaactccgggcccggacacagggcggcagagcgcaggcaggcccgcaaagcc
caggtcacagagaccctcctcaaggccaaggagcggctggtcaacgcaacatctgagagc
tcgctatcagtcggaagtgacattgatctgacggagcctcccggtctaaatttcacactg
aggaaatcctgggaccccacgccagaaggagctggacttgaggtgttgatgtccagttgc
tctctgtgccggagctgcaactctctgatctacgatgaggagatcatggctggctggacg
tccgacgactccaacctcaactccagctgtccgttctgctcggccaccttcgttccgctg
ctcaatgcagagatctgcgacctgggtcccgtcagcagcttagagcggagcacgttgaat
gcagaggatgaggtggagagtgccatgaggccccctggtggtcaggagagctcagagcgg
cctctgcacaacggcctgagcgacgactccacctccgagaccagcggctactccgagagc
agcggcagcaacaacacgctcgactcttcatctgtcaacgggcctcctctggtgacggtg
gcctacctgagcccgctggtgctgcggaaggagctggagagcctcctggagaacgagggc
gaggccgtgctctcgcagccccagctgctggacagccactccatcatcttctggaacctg
gtctggtacttccagcgcctgggcctccccagcaacctgctgcagctcatccgctcctca
cagctcggcgcgcacctcacacagactatcgagaaccccgcggtgcgagtgaggcttctc
tgggacacactgacgcctgacattgacttctggcctccgctctacgtcctctggagaata
cacagtggtgtgcacatgctgcggtaccacagctggcggaggcacaaccaccccttcacc
ctgagcttcctggaggaagtgctgcgctgggtcggcatgaacgaggtacacaaggcggtc
accctcatcctggataccatcgccaagcaaccgggcaacccgaagacccagaggagtttg
tacagagagatcctgttcctgaccctggctgccatgggaaaagatcatgtcgcggcgttc
gataagaagtacaaggcggcctactctcgcctgagtggctccctgggccgggaggagttg
cggcggaagcgagcgcagccgcccagccccaaagccgtggactgccgacgctgcttcctg
atgcctctggagtgctga
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