Clupea harengus (Atlantic herring): 105909027
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Entry
105909027 CDS
T09045
Name
(RefSeq) collagen alpha-1(XIV) chain
KO
K08133
collagen type XIV alpha
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
char00535
]
105909027
Proteoglycans [BR:
char00535
]
Extracellular matrix (ECM) proteoglycans
Others
105909027
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
NDNF
FN3_Tor_3rd
VWA_3
DUF4959
vWA_SIBA-E
Fn3_nematode
Motif
Other DBs
NCBI-GeneID:
105909027
NCBI-ProteinID:
XP_042566595
UniProt:
A0A8M1KV95
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Position
19:complement(12147262..12205883)
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AA seq
1885 aa
AA seq
DB search
MQMTGFSSVLILASVWLVPLPVRGQVSSPRRLRFKVLGTDQLGVSWKEPKGDFDGYKLIY
SKESGGEVRVIQVPKNEGKAVIENFDRAQEYNFKVVALSGNKESKPLVGQYKAQGTDANN
DIVQPQKQKDPATTEEDNEIREVDLFTCSIPATADIVILVDGSWSIGRINFRLVRAFLEN
LVSAFSVSSDKTRIGLAQYSGDPRIEWHLNAHTTKESVIDAVKNLPYKGGNTLTGLALTY
MLENSFKPESGARTGIPKIGILITDGKSQDDVQPPAQSLRNAGIELFAIGVKNADENELK
AIASPPKETHMYNVADFGDMSSIVESLTRTICDRVEQLNKDIKGKQKRRKGACCPAPPRD
LVTSEVTARSFRVTWTHAPGAVEKYRVVYYPAKGDKPEEVVVKGSENTVVLRYLNSLTEY
QVALFAVYSNTASEALRGTETTLALPMVGDLELFDVTHNSMIARWRGAAGASGYMILYAP
LTEGESADEKEVKVAESVTEVELEGLTPDTEYTVTVYAMYGDDASDPMTGQEITLPLSPA
RNLRITDVNHTSGRLTWDEASRKVRGYRIVYVKSRGAQSSEFEVGRITSHLLQNLTSLTE
YAVAIYAMYEEGQAEALKGSFTTKTVPEPLNGRTKEVSYNSFRVSWQHPATDVVLYKLLW
GESDGDGDVEEVLVNSQTNTYLVTGLKPLTEYEVSLSGIYKDESESESVILLETTAAGTT
TIRTTTTIAAVVRQAVRNVQISEQTTFSFRVSWELQDPNVRQYRISYVTRQGDRAEEVTM
VPSQQKSLLLQSLLSDTEYQVTVTPVYADGPGPVMTRVGRTLPLTSPRNLRVSEEWYNRF
RITWDTPPSPTMGYRIVYQPTSGPGRALETFVGEDVNTILILNLLSGTEYSVKVIASYTT
GSSEALIGNAKTLYLGVTNLKTYQVRTTSMCTQWQPHRHATLYRIMLESLVNGERQEASL
GGGASRHCFSNLSPNTEYKISIYAQMQEAEGPAVTTTQKTFPLPTAAPTRPPTTPPPPTV
PQAKEVCKAAKADLVFLVDGSWSIGDDNFHKIIRFLHSTTGALDQIGPDGTQVAIAQFSD
DARTEFKLNSYNNKERLLEAIQRIAYKGGNTKTGKAIQHVKDTIFTAEGGIRRAVPKVLV
VLTDGRSQDDVHKVSKEMQIEGYIVFAIGFADADYGELVSIASKPSERHVFFVDDLDAFQ
KIEEKLVTFVCESASATCPSVPMRGSTMPGFRMMEVFGLTEQQYGNLDGVSMEPGTFNSF
PCYKLHKDAFIVQPTRYIHPEGLPSDYTISMLFRLLPETPEEPFALWEILNKDNEPIVGV
ILDHGGKTLTFFNNDYRGEFQTVTFEGPQIKKLFFGNFHKLHLVVSKTTVKAMIDCKLVG
ERPVNAAGNITTDGVEVLGRMVRSRSQKDNSAPFQLQSFEIVCSTSWASRDRCCDLPALR
KEEDCPALPRSCTCTQDSKGPPGSPGPPGGPGIRGARGERGEPGPVGLAGPVGDAGLAGT
QGPPGPQGPSGRTIIGPQGGPGERGQKGDGGPPGPQGNPGTTGPRGGAGPPGPRGQTGKD
GSQGRQGPSGTIGGPGNPGAPGQNGPPGPLGEQGPPGLPGVKGERGERGDVQSSSNVQAI
ARQVCEQLIQSHMARFSSILNHVPSAPVSVRTVPGPPGEPGRAGSRGPQGEQGPPGRPGF
PGSNGENGQPGSRGLGGEKGEKGSPGVGVQGPRGPSGPPGPPGEGRTGSPGGSGRPGNPG
TPGRPGIPGSVGSAGPPGYCDQNSCVGYNIGEEESDGDPSPRGISIAQVPSAYQPYDPRE
HGEAEEGAYNYGVAYGSEYYHPNYPAPQPVAPDDPLLEADGATELRSPGVHRSSRSLAET
AEDTAAAAQEHHVGPKGDLKPADLH
NT seq
5658 nt
NT seq
+upstream
nt +downstream
nt
atgcagatgacagggttcagctctgtgctgattctggcttcagtatggcttgttcccctg
ccggtgcggggtcaagtttcatccccacgaagattacgttttaaggtattgggcacagac
caactcggtgtgtcttggaaagagccaaaaggagattttgatggctataagttgatctat
agcaaagaatcaggaggagaggtgagggtaattcaggtgcctaagaatgaggggaaggct
gtgatagagaactttgaccgtgcccaggagtacaacttcaaagttgttgctcttagtggg
aacaaggagagcaaaccactggtgggacaatacaaggcacagggaacagatgcaaacaat
gacattgtgcagccacagaaacagaaagaccctgcgactactgaggaggacaatgagata
agagaagtggacctgttcacgtgtagtataccggccactgcagacattgtgatcctggtg
gacggctcctggagtattggccgcattaacttccgtctggtccgggcgtttctggagaac
ctggtcagcgctttctcagtgagctcagacaagaccagaattggtctggctcagtacagc
ggtgacccgcggattgagtggcatctgaatgcccacacgaccaaagagtctgtgattgac
gctgtgaagaacctaccatacaaaggaggcaacacactcactggccttgcactgacgtac
atgttggagaacagtttcaagccagagtcaggcgccaggacgggcattcccaaaatcggc
atcctgatcaccgatgggaaatcacaggatgatgtgcagcctccggcccagagtctccga
aatgccggaatagagctgtttgccattggtgtgaagaatgcggacgaaaatgagctgaag
gccatcgcctcccctcctaaggagacccacatgtacaacgtggcggacttcggcgacatg
agcagcatcgtggagagcctcacccgtaccatctgtgaccgcgttgagcagctcaacaag
gacatcaaaggcaagcagaagagaagaaaaggggcctgctgcccggctcccccccgtgac
ctggtgacctctgaggtgacagcccggagcttcagagtcacctggacacacgcgcctggt
gcggtagagaagtatcgcgtggtgtactaccctgctaaaggagacaagccagaggaggtg
gtggtgaaaggcagtgaaaacacggtggtgctacgctacctgaactccctgaccgagtac
caggtggccctgttcgcagtctacagcaacactgccagcgaagctctccggggcacagag
acaacacttgccttgcccatggtgggcgacctggagctcttcgatgtcacgcacaacagc
atgatcgcccgctggagaggagcggcgggcgcttcggggtacatgatcctctacgcccct
ctcacagagggggagtccgccgacgagaaagaggtgaaagtggcagagagtgtcacagag
gtcgagcttgagggtctgaccccagacactgagtacaccgtgactgtctacgccatgtac
ggagacgacgccagtgaccctatgaccggccaggagatcacattgccactctccccggca
cgtaacctccgcatcacagatgtcaaccacacctcaggtcggctgacttgggatgaagct
tccaggaaggtcagaggttaccgcatcgtgtatgtgaagtccaggggtgcacagagcagc
gagtttgaggtgggccgcatcaccagccacctcctgcagaacctgacctctctgacggag
tacgcagtggccatctacgccatgtatgaagagggtcaggctgaggctctcaaaggcagc
ttcaccaccaagactgttcctgagcctctgaacgggcgaaccaaagaggtcagctacaac
agcttcagagtcagctggcagcaccctgccacagatgtcgtcctttacaagctcttgtgg
ggagagagtgatggcgacggagacgttgaagaggtgttggtgaattcccaaacaaacacc
tatctggtgactggcctaaagcccctcaccgagtacgaggtgtctctctccggaatatac
aaagatgaatcagagagcgaatcagtcatccttctggaaaccactgcggcaggaaccaca
accatcagaaccaccactacaatagctgcagtggtgcgtcaggctgtgaggaacgtgcag
atcagtgagcagaccaccttcagcttccgcgtctcctgggagctccaggaccccaacgtc
cgtcagtaccgcatctcctacgtgaccaggcaaggggaccgcgcagaggaggtgaccatg
gttccaagtcaacagaagagccttctgcttcagtctctgctgtcagacactgagtaccaa
gtcaccgtcacccccgtgtacgcagatggaccgggccccgtaatgacccgcgtgggtcgc
accctgcctctgacttcgcctaggaacctaagagtgtctgaggagtggtataaccgtttc
cgaatcacctgggatacacccccatcacccaccatgggatacagaattgtctaccagccc
acctctggcccagggcgcgccctggagacgtttgtgggtgaagacgtgaacaccattctg
atcctcaacctgctctccggcactgagtacagcgtcaaagtcatcgcctcatacaccaca
ggctccagcgaggcgctcattgggaacgccaagacattgtacctgggcgtgaccaacctg
aagacctaccaggtgcggaccaccagcatgtgtacccaatggcagccacatcgccatgcc
accctgtaccgcatcatgctcgagtctcttgttaatggagagagacaggaagcgtcactg
ggaggtggggcatccagacactgcttcagcaacctgtcgcccaacacggagtacaagatc
agcatctatgcccagatgcaggaggctgagggcccagctgtcaccaccacccagaagaca
ttccccctgcctaccgcagctccaacaagaccccccaccactccacctcctcccactgtg
ccccaggccaaagaagtttgtaaagctgccaaggccgatctcgtcttcttggtggatggc
tcctggagtattggcgatgacaacttccataagatcatccgcttcctgcacagcacgact
ggggcgctcgaccagatcggcccagatggcacacaggtggcaattgctcagttcagcgac
gatgccaggacggagtttaaactcaactcgtataacaacaaggaacggctgctggaggca
attcagcgcatcgcttacaaaggaggcaacaccaaaacagggaaagccatacagcacgta
aaggacaccatctttactgcagaggggggtatcaggagggccgtccccaaagtgctagtg
gtcctcaccgatggacgctcccaggacgacgtccacaaggtctccaaggagatgcagatt
gaaggttacattgtttttgccatcgggtttgcggacgccgactatggggagttggtgagc
attgccagcaagcctagtgagaggcatgtattctttgtggacgacttggatgctttccag
aagattgaggaaaagctagtgacattcgtgtgcgaatctgcatctgcaacttgcccatct
gtgccaatgagaggcagcactatgccaggctttaggatgatggaggtgtttgggctgaca
gaacaacaatacggtaaccttgacggtgtgtccatggagcccggcacatttaacagcttc
ccctgctacaagcttcacaaggatgccttcattgtccagcccaccaggtacatccaccca
gagggcctgccgtctgactacaccatctccatgctgttccgcctgctccctgaaacgcca
gaagagccttttgctttatgggagatcctcaacaaagacaatgagccgattgttggtgta
attctagaccatggcgggaagactctcactttcttcaacaacgactacagaggggagttc
cagaccgtcacctttgaggggccccagatcaagaagctattctttggcaatttccacaag
ctccacctagttgtcagcaagaccacagtcaaggccatgattgactgtaaactggtgggc
gagaggccggtaaacgcggcagggaacatcaccacagacggagtggaggtgctggggagg
atggtgcgctccaggagtcaaaaggacaattcagcaccgttccagctccagtccttcgaa
attgtctgcagcacatcctgggccagccgggacaggtgctgtgatctcccagccctgaga
aaggaggaagattgccctgctcttccccgctcctgcacctgcacacaggacagcaaaggc
ccccctggatcccctggacctcctggtggccctggaataagaggagcgagaggggaacga
ggggaacctggccctgtggggcttgctgggccagtgggagatgcaggactcgcagggact
cagggaccccctggcccacagggaccaagtggaagaaccatcattgggccccagggtggt
cctggtgaacgtggtcagaaaggagatggaggcccacctggacctcagggcaacccagga
acaacaggaccacgtggcggtgcaggaccacctggcccgaggggtcagactggcaaagat
ggatctcaaggacgacaaggtccatcagggaccattggtgggccaggaaatccaggggcg
ccaggccaaaatggaccacctggacctttaggagaacaaggcccgcctggtctccctgga
gttaaaggagagaggggtgaacgaggtgatgtccagtcctcatctaacgttcaggcgatc
gcacgacaagtctgtgaacaactcatacagagtcatatggcgcgcttcagctccatcctc
aaccatgtcccgagtgcgcctgtgtccgtccgcacagttcccggaccccctggtgagcct
ggcagggcaggatcccgtggaccgcagggagagcagggtcctcctggaaggcctgggttc
cctggaagtaatggagagaatggccaaccaggatccagaggtcttgggggtgagaaggga
gaaaagggaagcccaggcgtcggagtccaaggtcccagaggcccttcgggtcctccagga
ccacctggagaaggccggactggtagcccgggtggatctggtcgcccaggcaaccctggt
actcctggccgacctggcataccaggctcggttggatcagctggcccccctggctactgt
gaccagaactcctgtgtgggctacaacataggagaggaagaatctgatggtgacccatct
cctcggggtatttccatagcccaagtgcccagcgcctaccagccgtacgaccccagggaa
cacggcgaggcagaagaaggcgcatacaactacggagttgcctacggctccgagtactac
catcccaactacccggccccccaacccgtcgccccagacgatccgctgctggaagcagac
ggagccacggagctccggtctcccggcgtgcaccgctcctcgcgcagcctggctgagaca
gcagaggacaccgccgccgcggcccaggagcatcacgtcggcccaaagggagacttgaaa
cctgctgacctccattga
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