Clupea harengus (Atlantic herring): 105909049
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Entry
105909049 CDS
T09045
Symbol
rxrba
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03320
PPAR signaling pathway
char04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
105909049 (rxrba)
03320 PPAR signaling pathway
105909049 (rxrba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105909049 (rxrba)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
char03310
]
105909049 (rxrba)
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
105909049 (rxrba)
Nuclear receptors [BR:
char03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
105909049 (rxrba)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
105909049
NCBI-ProteinID:
XP_012693079
Ensembl:
ENSCHAG00000012452
UniProt:
A0A6P8H4S0
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Position
19:complement(11982236..12003686)
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AA seq
482 aa
AA seq
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MGDSRDSRSPDSSSVSSPPPGQRSPPLASSAAAMTSLPPITSAVNSPISSMGSPFSVISS
SMGSPCIPGTPSVGYGPISSPQMSIYTRSSEINSTVSMSGLHAVSSSDDVKPPFGLKSLS
ANSPGGPMLSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCMVD
KRQRNRCQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKEREAGDVESTTAANEEMPV
EKILEAEMAVEQKTELQADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELAL
DDQVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRENAHNA
EVRAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLREKVYASL
EAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQ
LT
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacagtagagattcccgcagccctgacagctcgtctgtgtcgtctccgccccct
gggcaacgctcacccccattggcttcctcagctgctgccatgacgtctctgccgcccatc
acctccgcggtgaacagcccgatcagcagcatgggctcacctttctccgtcataagctcc
tccatgggctcgccgtgcatcccaggcacaccctccgtaggctacggtcccatcagtagc
ccccagatgagtatctatacaagaagttcagagattaactccacagtgtccatgtcgggc
ctgcacgcggtcagcagctcagacgatgttaagccccccttcggtctcaagtctctgtca
gccaacagccccggggggcccatgctgtcccagaagcgcctgtgtgccatctgtggagac
cgctcctctggtaagcactatggcgtgtacagctgcgagggctgcaaaggcttcttcaag
cgcacagtgaggaaagacctgagctacacctgccgcgacaacaaggactgcatggtggac
aagcgccagcgcaaccgctgccagtactgccgctaccagaagtgcctggccatgggcatg
aagagagaagtggtccaagatgaacggcagcgatcagtacaggaggagcgtcagaggaat
aaggagcgtgaagcaggagatgtggagtccaccaccgccgccaacgaggagatgcccgtg
gagaagattctggaggccgagatggcggtcgaacagaagactgagctgcaggccgacggg
agttctgggggcagttctcccaacgaccctgtcaccaatatctgccaggcggctgacaag
cagctcttcacgctggtggagtgggccaagcggatcccccacttctccgaactggccctg
gacgaccaggtcatcctcctacgtgccggttggaacgagctcctgattgcctccttctct
caccgctccatctctgtgaaggacggcatcctgctggccacgggcctccacgtgcacagg
aacagtgcccacagcgctggcgtaggggccatcttcgacagggagaatgcgcacaatgct
gaggttcgggccatattcgacagggtgctcacggagctggtgagtaagatgcgtgacatg
cagatggacaagaccgagctgggctgcctgcgcgccatcatcctcttcaacccagatgct
aaaggcttgtccaaccccagtgaagtagagttgctgagagagaaagtgtatgcctccctg
gaggcctactgtaaacagagataccctgagcagcagggcaggtttgctaagctcctcctc
cgactgccagcgctgcgctccattggtctgaagtgtctggagcacctgttcttctttaag
ctgattggtgacacccccatcgacaccttcctgatggagatgctggaggctccccaccag
ctcacttaa
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