Clupea harengus (Atlantic herring): 105909117
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Entry
105909117 CDS
T09045
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105909117 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105909117 (smarcd2)
03036 Chromosome and associated proteins [BR:
char03036
]
105909117 (smarcd2)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105909117 (smarcd2)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
105909117 (smarcd2)
PBAF complex
105909117 (smarcd2)
GBAF(ncBAF) complex
105909117 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
105909117
NCBI-ProteinID:
XP_031423671
Ensembl:
ENSCHAG00000009940
UniProt:
A0A6P8FJ76
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All DBs
Position
1:complement(12451127..12464073)
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AA seq
506 aa
AA seq
DB search
MTSRAGFPGSPGSLMNPGVNPVNPGHAGGMRMAVMQPNSGYRGMPNSAPPYHQSSPQRHM
LPNRGMPMPGMGGMGGPMPGPSYGGGMPMRSGIGQSSMDPTRKRLLQQQQQSAGMAGHRR
GGKRRKMADKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPITQKRK
LRIYISNTYTPAKPEGEEAEKVSSWELRVEGKLLEDPGKLKRKFSSFFKSLVIELDKELY
GPDNHLVEWHRLPTTQETDGFQVKRPGDINVKCTLLLMLDHQPPQYKLDPRLARLLGVHT
QTRASIMQALWLYIKNNKLQDSHEKEYINCNRYFRQIFTCNRMKFSEIPLKLAGLLQHPD
PIVINHMISVDPNDQKKTACFDIDVEVDDPLKAQMTGFLSSTTNQQEIATLEMKIHETIE
SINQLKTQRDFMLSFSTNPQDFIQDWLKSQSRDLKLMTDVAGNPEQERRTDFYQAPWVPE
AVGRYVYSKVQQRRQELEQVLGIRLT
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgacttcccgagcgggttttccagggagtcctggttctctgatgaaccccggagtgaac
cccgtgaacccaggacatgcgggcgggatgaggatggctgttatgcagcccaactcggga
taccgtggaatgcccaattctgctcccccctaccaccagtcatctccacagcgtcacatg
ctccccaacagagggatgcccatgccggggatggggggaatgggagggccaatgccagga
ccatcttacggcggaggtatgccaatgcggtcgggcataggccagtcttccatggacccc
acccgaaaacggctcctccagcagcagcagcagtctgcagggatggcagggcacaggaga
ggtggaaaacgacgaaagatggccgacaaagtgctcccacagaggatccgagacctggtc
ccagagtcccaggcttacatggacctgctggccttcgagagaaagctggatcagaccatc
gcccgcaagcgcatggagatccaggaggccatcaagaagcccatcacgcaaaagcgcaag
ctgaggatctacatctccaacacctacacacctgcgaagcctgagggtgaggaggcagag
aaagtgtcatcatgggaactccgagtggaaggaaaactgctggaggacccagggaaactg
aagaggaagttctcctccttcttcaagagcctggtgatcgaactggacaaagagctctat
ggtccagacaaccatctggtggagtggcacaggctgcccaccacccaggagacggatggc
ttccaggtgaagcggccgggtgacattaacgtcaagtgcaccctcctgctcatgctagac
caccagcccccccagtataaactggacccgcgtctggccaggctgctcggggtgcacacc
cagacgagagccagcatcatgcaggccctgtggctctacatcaagaacaacaagctgcag
gacagccacgagaaggagtacatcaactgcaaccgctacttcagacagatctttacctgc
aatcgcatgaagttctctgagattcccctcaagctggccggccttctccagcatcctgac
ccgattgtcatcaaccatatgatcagtgtggaccctaacgaccagaagaagacggcgtgc
tttgacatcgacgtggaggtggacgacccactgaaggcccagatgaccggcttcctttcc
tccaccaccaaccagcaggagatcgccacgctggagatgaagatccacgagaccattgag
tccatcaaccaactgaagacacagagggacttcatgctgagcttcagcaccaacccccag
gacttcatccaggactggctcaagtcccagagcagagacctcaagttgatgactgacgtg
gccgggaacccagagcaggagaggcggactgatttctaccaggcgccctgggtccccgag
gccgtcggacgctacgtttactccaaggtacagcagaggaggcaggagcttgagcaggta
ttgggaatcagacttacctga
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