Clupea harengus (Atlantic herring): 105909168 Help Entry 105909168         CDS       T09045                                  Symbol rad50 Name (RefSeq) DNA repair protein RAD50   KO K10866   DNA repair protein RAD50 [EC:3.6.-.-] Organism char  Clupea harengus (Atlantic herring) Pathway char03440   Homologous recombination char03450   Non-homologous end-joining char04218   Cellular senescence Brite KEGG Orthology (KO) [BR:char00001]  09120 Genetic Information Processing   09124 Replication and repair    03440 Homologous recombination     105909168 (rad50)    03450 Non-homologous end-joining     105909168 (rad50)  09140 Cellular Processes   09143 Cell growth and death    04218 Cellular senescence     105909168 (rad50)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:char03032]     105909168 (rad50)    03400 DNA repair and recombination proteins [BR:char03400]     105909168 (rad50) DNA replication proteins [BR:char03032]  Eukaryotic type   DNA Replication Termination Factors    MRN complex     105909168 (rad50) DNA repair and recombination proteins [BR:char03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     MRN(MRX) complex      105909168 (rad50)     BRCA1-C complex      105909168 (rad50)    NHEJ (non-homologous end-joining)     MRX complex      105909168 (rad50) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_23 Rad50_zn_hook AAA_21 SMC_N SbcC_Walker_B ABC_tran AAA_29 TolA_bind_tri AAA_13 AAA_22 AAA_16 Motif Other DBs NCBI-GeneID:  105909168 NCBI-ProteinID:  XP_012693224 Ensembl:  ENSCHAG00000003034 UniProt:  A0A6P8FMZ6 LinkDB All DBs Position 8:9482608..9519464 Genome browser AA seq 1314 aa AA seqDB search MSKIEKMSILGIRSFGVQDKDKQVITFFTPMTVLVGPNGAGKTTIIECLKYITSGNFPPG ATGANFVHDPKDAQETDVRAQIRLQFRDMNGDFVAVQRSMMCSQKRKKVEFKTLEGVITR MKHGEKVSISSKCAEIDREMIAGLGVSKAILNNVIFCHQEDANWPLSEGKALKQKFDDIF AATKYIKVLDAVKQLRVKQGSVVRECETELKYLKLNKDKAQEIRDLLASKEELLATSVDS VERIANQITPLENQLLEIDDKLGNVMALDNNIKALESRKKQMEEDNRELEEKMEQVFQGS DSELQDMYENHQHLVKEKERRLVEQEKELHRAGRECQRLTNAKSELLVEQGRLQLEADRH AQSLKNRDAQVRSMASTLELEGYERAPFNRQQIQSFYQQVEDRQEQETEALRQVMRDLQE REAQKQQSLDEIRDKRTGLERTIELKRDLQSKKQQEFRAVNQELQRLEGSSGRLHDLEAQ LAKAEHELDSAVRNSSVDSMRVELEELQREKVELDRKQRQLDLEMSSLNTHTTARTQMDM LKKDKVDKEEQVRKIKARHSEDLVALMGHFPSKRELEDWIFSNSRETNSTREKLAKLNKE LASGEQNKSHCATEIRQKEQQLASYEDKLFSVCGSQDLQADLNKLQEDIEKSSKQRAMLA GATAVYSQFISQLTQPEEAEPCCPVCQRIFPSDNDLQEVVNDMQSKLRLVPDKLRNTEQD LRKREQRRDEMIALKPVRQSIVELQEKEFPTLRNKLQSINRDVERLKGDIEEQETQLSLL MSKDDTAKACQSDISLMDRYLMDLKDVERKIAQHAAKLQGVDLSRTMQQVSQEKQETQHR LDTTSSKMELKRKLIQDQQEQIHNLKSNVNEIRAEKLQISSNMQKQKQLEEQCVDFTTEI QALTREIKEAREQVSPLATTLEKLQQEKQELMARRSQRQNEGQDKINAIKDKMKNIMTLE REIKTYVDKGKEEYKEQKESELQETNTKLYEAETLREKINKEMASIRQDIDTQKVQERLL QDNLTFRKRGEQLKEVSKQREALLKEMGSMRVMELRQQRKELEDKLEELKRKRSVTLGRQ NGFKEEIIRCQKELREDQYRHAVERFRDKMIVMRTTELINKDLDIYYKALDQTIMKFHSK KMEEINKIIRDLWRNTYRGQDIEYVEIRSDMDESESAKSKRRIYKYRVVMVKGDTALDMR GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALIEITKIRQK QRNFQMLIITHDEDFVELLGRSNYMQHFYRIKKNVEQCSEITKCDISSVNTYLH NT seq 3945 nt NT seq  +upstreamnt  +downstreamnt atgtccaagattgagaagatgagtatcctgggaatcaggagctttggagtgcaggacaaa gacaagcaggtgatcacgtttttcacgcccatgaccgtgctggtcggacccaacggagca ggcaaaacgaccatcatcgagtgtctgaagtacatcacctctggaaactttcccccagga gccacaggtgcaaattttgttcacgatcccaaggatgcccaggagaccgatgtacgtgct cagatccgtctgcagttccgggacatgaatggagactttgtggccgtgcagcggtccatg atgtgctcgcagaaacggaagaaggtcgagttcaagaccctggagggagtcattaccagg atgaaacatggagagaaagtcagcatcagctcaaagtgcgctgagatcgaccgcgagatg atcgccgggctcggcgtctccaaggccatcctcaacaatgtcattttctgccaccaagag gacgccaactggccgctcagcgaagggaaagccctgaagcagaagttcgatgacatattc gcagccacaaagtacataaaggtgctggatgcagtgaagcagctgcgtgtgaagcagggg tctgtggtccgcgagtgcgagacggagctcaagtacctgaagctgaacaaggacaaggct caggaaatccgtgacctgctggccagcaaggaggagctgctggcaacgtcagtagacagc gtggagcgcattgccaaccagatcactcctctggagaaccaactgctggagattgatgat aagctgggcaatgtgatggctctagataacaacatcaaggccctggagagcaggaagaaa cagatggaggaggacaaccgagagctggaggagaagatggagcaggttttccaagggtca gacagtgagctgcaggacatgtatgagaatcaccagcacctggtgaaggagaaggagcgc cggctggtggagcaggagaaggagctacaccgcgccggacgcgagtgccagaggctcacc aacgccaaatcagagttgctggtggagcagggtcgtctccagcttgaggctgaccgacac gcccagagcctgaagaaccgcgacgcccaggtgcgctctatggcctcgacgctggagctg gagggctacgagcgagcgccctttaacaggcagcagatccagagcttctaccagcaggtg gaggacaggcaagagcaggagactgaggccctcagacaggtcatgagggatctgcaggag cgggaggcccagaagcagcagagtctggacgagattcgggacaagcgcacgggcctggag cgcaccatcgagctgaaacgcgacctccagagcaagaagcagcaggagttccgcgccgtc aatcaggagctgcagcggctggagggctcgtctgggcgcctgcatgacctggaggcccag ctggccaaagcggagcatgagcttgacagtgcggtgcgtaactcctctgtggacagcatg cgtgtggagctggaggagctgcagagggagaaggtcgagctggaccgcaagcagaggcag ctggacctggagatgagtagcctcaacacacacaccaccgcccgcactcagatggacatg ctcaagaaagacaaggtggataaggaggagcaggtgaggaagatcaaagccaggcacagc gaggacctggtggccctaatgggacacttccctagcaagagagagctggaggactggatc ttctccaactccagggagaccaactccacccgagagaaactggccaaactcaacaaggag ctggcctccggagagcagaacaagagtcactgtgcgactgagatccgccagaaggagcag cagctggccagctacgaggataagctcttcagcgtctgcggcagccaggacctgcaggcc gacctcaacaagctccaggaggacattgagaagagctccaagcagagagccatgctggcg ggtgccacggccgtgtactctcagttcattagccagctgacccagcccgaggaggcggag ccctgctgccccgtgtgccagcgcatcttcccctctgacaatgacctgcaggaggtcgtc aacgacatgcagtccaagctgcgcctggtgcccgacaagctcaggaacaccgagcaggac ctgaggaagagggagcagaggcgcgacgagatgatcgccctgaagcccgtcaggcagtcg atcgtagaactgcaggagaaggagtttcccactctacggaacaaactccagagcatcaac cgggatgttgagcgccttaagggggacatcgaagagcaggagacgcagctttccctgctc atgtccaaagacgacacggccaaggcatgtcagtccgacatctctctcatggaccgctac ctgatggacctgaaggatgtggaaagaaagatagctcagcacgctgccaagctccaggga gtggacctgagccgcaccatgcagcaggtcagccaggagaaacaggagacccagcatcgg ctggacaccacatcgagtaagatggagctgaagcgcaagctgatccaggaccagcaggag cagattcacaatctgaagagtaacgtgaacgagatcagggcagagaagcttcagatcagc agcaacatgcagaaacagaagcagctggaggagcagtgtgtggacttcaccaccgagatc caggccctcaccagagaaataaaagaagccagggagcaggtgtccccactggctaccact ctggagaagctgcagcaggagaagcaagagctgatggctcgtcgttcacagaggcagaac gagggccaggataagatcaatgcaattaaggacaaaatgaaaaacataatgacactggaa cgagaaatcaagacgtatgttgacaaggggaaagaagagtacaaagagcaaaaagaatca gaacttcaggagacaaacacaaaactttatgaagcggagacacttcgagagaagatcaac aaagaaatggccagcatcagacaagacatagatacacaaaaggtccaggaacgcttgctg caagataatctcacctttaggaagcgcggtgagcaacttaaagaggtttcgaaacagcga gaggctcttctgaaggaaatgggaagcatgagagtcatggagctccgccaacaacggaaa gagctggaggacaagctggaagagctgaagagaaaacgtagcgtgacactgggacgacag aacggcttcaaggaggagatcatccgctgccagaaggagctccgtgaagaccagtaccgg cacgccgtggaacgcttcagggacaagatgatcgtcatgagaacaactgagctcatcaac aaagacttggatatctactacaaggccctagatcaaacaataatgaagttccacagcaag aagatggaggagataaacaagatcatccgggatctgtggagaaacacctaccgaggacaa gacatcgagtacgtggagatccgctcagacatggatgagagcgagtctgccaagtcaaag agacggatctataagtatcgcgtggtgatggtgaagggagataccgcgcttgacatgaga ggtcgctgcagtgctgggcagaaggtcctggcttcactcatcatccggctggctctggca gaaaccttctgtcttaactgtggcatcctggccctggatgaacccaccaccaatctggac cgtgagaacatcgagtctctcgctcatgcccttatagaaatcacaaagattcgccagaag caacgcaacttccagatgcttatcatcacccacgacgaagactttgtggagctgctgggc cgttcaaactacatgcagcatttctacagaataaagaaaaatgtcgagcagtgctcagag atcacaaagtgtgatatctcctctgtcaatacttacctgcattaa

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