Clupea harengus (Atlantic herring): 105909186
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Entry
105909186 CDS
T09045
Symbol
med13a
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13a
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105909186 (med13a)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
105909186 (med13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
105909186
NCBI-ProteinID:
XP_012693252
Ensembl:
ENSCHAG00000023322
UniProt:
A0A6P3W9W2
LinkDB
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Position
8:8296024..8365039
Genome browser
AA seq
2207 aa
AA seq
DB search
MSSCFVPNGASLEDCHSNLFCLADLTGIKWRRYVWQGPTSAPMLFPVTEEDPILGSFGRC
LRSDVLSVWKRSQRQGRRELWLFWWGDDPNFADLIHQELTAEDDGVWESGLSYECRTLLF
KAIHNLLERCLMNRSFVRLGKWFVKPYEKDEKPINKSEHLSCAFSFFLHGDSNVCTSVEI
NQHQPVYHLSEEHLTLAQQASTPFQVILSPFGLNGTLTGQSFKLSDPPTQKLIEEWKQFY
PISHSAKENAEDKMEDVDWEDDSLAAVEVLVGGVRMVYPACLVLVPQSDIPTVVPVGSSH
GPTVYSGSHQVPASQRDPAISSVTLTPPTSPEEAQTVDSQSAQKWVKLSSVMDGFSTDTT
SHHGGKIPRRMASQVVERVWQECNLNRTQNKRKFSVTANGTGEADVPEKVGAWDFVEATQ
RSTCHCSRHKNLKQRAGVPPGQPPTSGQTPQPPTKHKTGEKPEKADKQQKRQQMPFHHRN
STCEDVALEPDASGQRLALRGPDGGGGATARFPGMRPSEVGPNVSSKPPQLHGGGGGGGG
GGGTGPGGSVEMAGSPQPPPLSPHPCERSEETSDSLKNPSTPHSQHFYPQPPSSEPCLLP
QKGGGGGDEPRLEPLQPPFHSGVANYPEPLEPTVYVGTAVSLEEDGGGGGGGSHAPWRFF
NLPRRKEGTEFYTPNLPWDKLREEAAHGQDGTVSVTERMATSKRPMKVSEERVQMYVQQQ
NKYLSSASISDGDHEPEVDPYAFEDGDVKFFFPNERKDKSGREREPGKKHKGDDGGAGTS
DDAQRTANQARTAPASLIHENDLAVSMNDLDNLFNSDEDELTPGARRGVNGTDDKFGARE
PKPATLDPVSCISSADLHQMFPTPPSLEQHIMGYSPMNMGSKEYGSMDPGAGMTSLDGAS
GLGGQFKMEVEESLCSPKPAEIKDFSFVYKPELWQAFVGCSMFAPLKMLPSQCLQPLKMP
DECIYRPSWTVGKLELLNSMPSMNFLSKDGNIPSVGSAMEQEYQSYTPQTHTPFMSNSAP
PSNSATTGILPSPATPRFSAPTPRTPRTPRTPRGPASVQGSHKYDNSDLYSPASTPSTCR
PLNSVEPATVPSIPEAHSLYVTLILSESVMNLFRDCSFDSCCICVCNMNIKGADVGVYIS
DPNMEAQYPCGCGFSAVVNRRYGNGSGLFLEDELDIIGRGSDVGRDAEKRFEILRSSSLE
RTGGGGKDRVPDELILLMKDQCTNPFSPISGLEMDGSAAAVGTPGRMPCAPPCVRVEERD
FHSDCYMALEHGRQFMDNMSGGKVDETLVKNTCLHHWAKQNAVDGSTLCSQDVLRVLLSL
QPVLQDAIQKKRTLRAWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTFLVGYEYDFV
VLSPFGLPYWEKLLLDPFGSQRDVGYLVVCPDSDALLSGAKSFFKELTAVYEACRLGQHR
PISKVHADGIVRVGGAAAKKLSDQPVNDWFLKAASGNNDSFAKLKLFAQVCRHDLAPYLS
AQPLDSSLLTQPSPAPAAFSQSSSAQSSGSTPSAGSQGTAASASAGAVSSNGAPGNNINS
SSTTTNATGLASGTAGGTPSSTSTGPQGASAMQSAKSSSFAPFGSLGVQGGGTQVGSMNQ
QTGGQNTGLPGDATAGVNQTQAPTEPIESTMEKEKVGIPTDGDSHAITYPPAIVIYIVDP
FSYEDADGASAHSSVWTLGLLRCYLELVQHLPPHIRNSISVQIIPCQYLLQPVQNEERHI
YAQHLKSLAFSVFSQCRRPLPASTNVKSLTGFGPGLALETALKSPERPECLRLYTPPFIL
APVKDKQTDLAETFGEASQKYNVLFVGYCLSHDQRWLLATCTDQYGELLETCIISIDVPN
RARRKKGSARRLGLQKLWDWCLGLVQMTSVPWRVVIGRLGRIGHGELRDWSILLSRRNLQ
SLSRRLKDMCRMCGISASDTPSILSACLVAMEPQGSFVIMPDSVSTGSVFGRSTTLNMQT
SQLSTPQDTSCTHILVFPTSAFVQVATSNYTTENIDIAFNPINDGSDAIGGIFDLLEQEN
EMVDPDIINILPASPTNSPVHSPGSHYHHGGDGSKGQSTDRMESHEETPNILQQPLALGY
FVSTAKAGPLPDWFWSACPQAQNQCPLFLKASLHIHVSSVQSDELLHSKHSHPLDSNQTS
DVLRFVLEQYNALSWLTCDPATQDRRSCLPIHFVVLNQMYNFIMNLL
NT seq
6624 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttgttttgtaccaaacggggccagcttggaggattgccattccaatctattc
tgtctggctgacctgacaggcataaaatggaggcggtacgtatggcaggggcccacctca
gcgcccatgctgtttccggtgacggaggaggaccccatcctgggcagctttggccgctgc
ctgcgctccgacgtgctgagcgtgtggaagaggagccagaggcagggccggcgcgagctc
tggctcttctggtggggagatgaccccaacttcgccgatctcatccaccaggagttgact
gctgaggatgacggcgtgtgggagagcggcctgtcgtacgagtgccgcacgctcctgttc
aaagccatccacaacctgctggagcgctgcctgatgaaccgcagcttcgtgcgcctcggc
aagtggttcgtcaagccctacgagaaggacgagaagcccatcaacaagagtgagcacctc
tcgtgcgccttcagcttcttcctgcatggggacagcaacgtgtgcaccagcgtggaaatc
aaccagcaccagcccgtctaccacctcagcgaggagcacctcaccctggcccagcaggcc
agcacccccttccaagtaattctgagtccatttgggctcaacgggacgctgacgggacag
tccttcaagctgtcggacccgcccacccagaagctcatcgaggagtggaaacagttctat
cccatcagccacagcgccaaggagaatgccgaagacaagatggaggacgtggactgggag
gacgactccctggctgcggtcgaggtcctagttggtggcgttcgaatggtgtaccctgct
tgcttggtgctggtgccccagtcggatatccccactgtggtcccggtggggtcctctcat
ggcccgaccgtttattcgggtagccaccaagtgcctgcgtcccagcgcgaccctgccatc
tcgtcggtcaccctcaccccacccacctcacctgaggaggctcagacagtggactctcag
tctgctcagaagtgggtgaaactgtcctcagtgatggacggcttcagcaccgacaccacc
agccaccacggcggcaagatcccccgccgcatggccagccaggtcgtggagcgcgtctgg
caggagtgcaacctcaatcgcacccagaacaaacggaaattctcagtgacggccaacggt
acgggtgaggcggacgttccggagaaagtgggggcgtgggactttgtggaggccactcag
cggtccacctgccactgctccaggcataaaaacctgaagcagcgagccggcgttcctccc
gggcagccccccacctcaggccagaccccccagccgcccaccaagcacaagacgggcgag
aagcccgagaaggccgacaagcagcagaagcgccagcagatgcccttccaccaccgcaac
tccacctgcgaggacgtggccctggagcccgacgcctccggccagcgcctggccctccgc
gggcccgacggtggcggcggcgccacggcccgcttccccggcatgcggccctccgaggtg
ggccccaacgtctcctccaagcctccccagctgcacggcggcggcggtggaggaggaggc
ggtggagggacgggtcccggcggctccgttgagatggcgggctcgccccagccgccccct
ctcagcccgcacccgtgcgagcgcagcgaggagacatccgactcgctcaagaacccctcc
acgccgcacagccaacacttctacccgcagccgccctcctccgagccctgcctgctgcct
cagaagggcggcggcggcggcgacgagccccgcctggagccgctgcagccccccttccac
tccggcgtggccaactaccccgagcccctggagcccaccgtctacgtgggcaccgccgtc
agcctggaggaggacggcggcggcggtggcgggggcagccacgcaccctggcgcttcttc
aacctgccgcggaggaaagagggaacagagttctacacgccgaatctgccctgggacaag
ctgcgcgaggaggcggcacatgggcaggatggaactgtgtctgtcaccgaacgtatggcc
acctcgaagaggcccatgaaggtgtctgaagagcgtgtgcagatgtacgtgcagcagcag
aacaagtacctgtcctcggcctccatctctgacggcgaccacgagcccgaggtggacccg
tacgcctttgaggacggcgacgtgaagttcttcttccccaacgagaggaaagacaagtcg
ggccgcgagcgagagccggggaagaaacacaagggggatgatggtggagccggcacctca
gacgacgctcagcgcacagcaaaccaggcccgcaccgccccggccagcctgatccacgag
aacgacctggccgtctccatgaacgacctggacaacctcttcaactcggacgaggacgag
ctcacgcccggggccagacgaggcgtcaacgggaccgacgacaagttcggcgccagggag
cccaaaccagccacgctggaccccgtgtcctgcatcagctctgccgacctgcaccaaatg
ttccccaccccgccgtctctggagcagcacatcatgggctactcccccatgaacatgggc
agcaaggagtacggcagcatggaccccggggctggcatgacctcgctggacggggcctct
ggtctcgggggccagttcaagatggaggtggaggagagcttatgcagccccaagcccgcc
gagatcaaggacttctcgtttgtgtacaagccggagctgtggcaggcgtttgtcggctgc
tccatgttcgccccgctcaagatgctacccagccagtgtctgcagcccctcaagatgccc
gacgagtgcatctaccggcccagctggaccgtgggcaagctggagctgctcaactccatg
ccctccatgaacttcctcagcaaagatggtaacatccccagcgtgggtagtgccatggag
caggagtaccagtcctacacgcctcagacgcacacgcccttcatgtcgaacagcgcgccg
cccagcaacagcgccaccacgggcatcctgccttcgcccgccacgccccgcttctcagca
cccacgccgcgtacccctcgcaccccccgaacgccccgcgggcccgccagcgtgcagggc
tcgcacaagtacgacaactcggacctgtactcgcccgcctccacgccctccacgtgccgc
ccgctcaactcggtggagccggccaccgtgccgtcgattccggaggcgcacagcctgtac
gtgacgctcatcctgtccgagtcggtcatgaacctgttcagggactgcagcttcgacagc
tgctgcatctgcgtgtgcaacatgaacatcaagggcgccgacgtgggcgtctacatcagc
gaccccaacatggaggcgcagtacccgtgcggctgcggcttcagcgccgtcgtcaaccgg
cgctacggcaacggctcggggctcttccttgaggacgagctggacatcatcggacgcggg
tcggacgtgggccgggatgccgagaagcggttcgagatcctgcgcagctcgtcgctggag
aggaccggcggcggggggaaggaccgcgtgccggacgagctgatcctgctgatgaaggac
cagtgcactaaccccttctcgcccatctcgggcctggagatggacggcagcgccgcggcg
gtggggacgcccggcagaatgccctgcgctcccccctgcgtgcgcgtggaggaaagggac
ttccacagcgactgctacatggccctggagcacggccggcagttcatggacaacatgtcg
ggagggaaggtggacgagacgctggtgaagaacacctgtctgcaccactgggccaaacag
aacgccgtcgacgggagcactctgtgctcgcaggacgtcctgcgggttctgctctcgctc
cagccggtgctgcaggacgccatccagaagaagaggactctgcgcgcctggggggttcag
ggccccctgacctggcagcagttccacaagatggccggacgaggctcttatggcacggat
gagtcgccggagcccttgcccatccccacgttcttggtgggctacgagtatgactttgtg
gtgctgtctcccttcggcctgccctactgggagaagctgctgctggacccgttcggctcg
cagcgggacgtgggctacctggtggtgtgtcccgacagtgacgccctgctcagcggagcc
aagagcttcttcaaggagctgacagcggtctatgaggcctgtcgtcttggccagcatcgg
cccatatcaaaggttcacgcagacggcatcgtcagagtgggtggggctgctgccaagaag
ctctcggaccaaccggtcaacgattggttcttgaaagcagccagtggcaacaatgactcc
ttcgccaagctcaagctctttgctcaagtctgcaggcatgacctcgctccatacctctct
gcccagccattggattcctccctcctcactcagccaagccccgccccagctgccttcagc
caatcgtcatccgcacagtcctcaggctccaccccctccgctggctcccagggcacggca
gcgtctgcatctgccggcgccgtctccagcaacggcgcccccggcaacaatatcaacagc
agcagcaccaccaccaacgccacggggctggcatcgggcaccgctgggggcaccccttct
tccacctccacaggccctcagggcgccagtgccatgcagtctgccaaatccagctccttc
gcgcccttcgggagtctgggcgtgcagggcggcggcacgcaggtgggctccatgaaccag
cagacgggcggccaaaacaccggcctccccggagacgccacagccggcgttaaccagacg
caagcccccaccgagccgatagagagcaccatggagaaggagaaagtgggcattcccaca
gacggcgactctcacgccatcacgtatcccccggccatcgtcatctacatcgtggacccg
ttctcctacgaggacgccgacggtgcctcggcccactccagcgtgtggacgctgggcctg
ctgcgctgctatctggagctggtgcagcacctgcccccgcacatccgcaactccatctcc
gtgcagattatcccgtgtcagtacctgctgcagccggtgcagaacgaggagaggcacatc
tacgcccagcacctcaagtccctggccttctccgtcttctcccagtgcaggcggcccctc
cccgcatccaccaacgtcaaatcactgacgggcttcggccccggtctggccctggaaact
gccctcaagagcccagagaggcccgagtgcttgcgactgtacacgccgccgttcatcctg
gcgccggtgaaggacaagcagacggacctggccgagacgttcggcgaggcctcgcagaaa
tacaacgtgctcttcgtgggctattgcctgtcccacgaccagcgctggctgctggccact
tgcaccgaccagtacggagagctgctggagacgtgcatcatcagcatcgacgtgcccaac
agggcgcggaggaaaaaaggctctgcccgacggctcggcctgcagaagctgtgggattgg
tgtttgggtttggtgcagatgacatcggtgccctggagagtggtgattggacgcctcggt
cgaataggacacggagagttaagagactggagtattctgctgagcaggaggaatctgcag
tctctgagccgccggttgaaggacatgtgcaggatgtgtggcatctccgcttccgacact
cccagcatcctcagcgcctgcctagttgccatggagccccagggctcttttgtcatcatg
ccagactccgtgtccacgggctccgtctttggccgcagcaccaccctcaacatgcagacg
tctcagctcagcacccctcaggacacctcctgcacgcacatcctggtgttccccacctct
gcctttgtccaggttgccacctccaactacaccaccgagaacatcgacatcgccttcaac
cccatcaacgatggatcagatgccattggtggtatctttgacctgctggagcaggagaat
gaaatggtggaccctgatatcatcaacatcctccccgcctcgcccaccaactccccggtg
cactcgccaggatcccactaccatcacggaggagacggcagcaagggccagagtaccgat
cgcatggagtctcacgaggagacccccaacatcctccagcagcctctggcgcttggctac
ttcgtatcgacagctaaagcgggcccactgcctgactggttttggtccgcctgcccacaa
gcccagaaccagtgccccctcttcctcaaggcctcgctgcatattcacgtgtcctcagtg
cagtcggatgagctgctccacagcaagcactctcatccactggactccaatcagacctca
gacgtgctcagatttgtgctggagcagtacaatgccctctcctggctgacctgtgaccct
gccacacaggaccggcgctcctgtctgcccatccactttgtggtgctcaaccagatgtac
aacttcatcatgaacttgctgtaa
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integrated database retrieval system
