Clupea harengus (Atlantic herring): 105909258
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Entry
105909258 CDS
T09045
Symbol
frem2b
Name
(RefSeq) FRAS1-related extracellular matrix protein 2b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105909258 (frem2b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
char04091
]
105909258 (frem2b)
Lectins [BR:
char04091
]
C-Type lectins
Lecticans
105909258 (frem2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Big_9
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
105909258
NCBI-ProteinID:
XP_031428902
Ensembl:
ENSCHAG00000008742
UniProt:
A0A6P8G0F3
LinkDB
All DBs
Position
9:complement(2411953..2488983)
Genome browser
AA seq
3137 aa
AA seq
DB search
MALNISLQRHGIPTVGVLFHLLVSALTLTGYASAQVFDSLGLSYGLRTDLSEDAILVANN
GIRVPFGRSSFVDPINDLVIQVQPGDKCSITVLDNDPLSQRPGLLSPKKFPCEFGPNDVK
YSHFGSRSPAKDRVRLQLRYDTQTDTVIIPFMMEVEVIFTQLEVLTRNMPLTVDKLLGAS
NPIDNKILEFTYDRNAYQCKLASLASGSTLPRYGKLIDEGKLGKMLDCDEFLRLNIRYQH
TFAHRSPNRDYIPMFVELQDKEGNIINQEFFQLMVRIREGEENTAPKPSFVAMMMMEVDQ
FVMTAITPDMLAAEDIESNPDDLIFNITSPLSFEEGYIVSTDDRNLPITSFYQRDLKELK
IAYKPPSVDSDGERIFQIEFEVVDTEAAVSDPFAFMIVVKPMNTLAPVVTRNTGQLLYEG
QSRPLSSSHNLEISDEDNLDSVRVSVIDGLRHGHLTVLGSRRKFFTPADLDNGVVIYQHD
GSDTYSDNIIFRMTDGKHEVEFLFPITVVPTDDEPPIINANTGLVLFKNQMMPISPLTLS
AADIDSEDSTIKFIIQPPFSTIGEVLLRQSEAPEDPSTWRFNAEDELYEKSVTEWLQQDI
TDGKLFYRHIGPHITEPVMDQFVFRVQDDNDPPNQSGESSFVIKVLPIDDIPPELYPGTT
LQMTVHEYQLTYFRKKFLRYTDLDSEDRDLKYTITQPPTDTDTNNPLVFGSIVLTESADV
QVTEFTQAQINHHKIAYKPPDVELGIIAHVVQFTFTCEDTAGNSATGSFNIYLQPVDNKP
PQITNSGFTVLEGSTHAITREELDTQDQDTDSSQISFTVIQPPLHGVVQYTFTDLTKGDV
FNLRDISEGKISYVHNGDESTSDYFQIDVSDGVHVVTITVRVTVKPVDDEKPTISLPAGT
IGSHIDVLENGATEITTSVIQGRDEDTDDLRLTFIVEDPPVFGEILVNGVPAGRFTQADI
INGFVVYAHTGGEIGLTTKEDYFNLTLTDMSDEWTVGGNKVTGVRVQVTILPLDSQAPEV
FVGPLFSVVEGEKNVIEILHISADDVDTHNDDLLCTIIVQPSSGYIENISPAPGSEKSRS
GTAISAFTIKDIRHNHIYYVQSIHKGVEPVEDRFTFRCSDGINYSEKHFFPIMIIPSNDE
KPEMYMREFVVMEGMNIVIDTPILNAADADVPSDELTFIITKPPKHGVILNQLTSGTVPV
TNFTLDQIREASSIVYEHDDSETTEDSFSVILTDGKFTVEKDVLIMVIPVDDETPRMAIN
DGLEIEIGDIKVINNRVLKATDLDSEDSSLTYVIRYGPNQGFLQRQTPFGYLENITIGMN
FTQSELDQDLIIYIHNGQEGIRDLIKFDVTDGINPLIDRYFYVTVGSIDMVFPDIISKGV
SLKEGGRVTLTTDLLSTSDLNSPDEHLVFTITRAPMRGHLECSDTPGMPISSFTQLHLAG
NKIYYIHTADDEVKMDSFEFEVTDGYNPVFRTFRVSISDVDNKKPVVTVHGLVVSEGENK
LITPFELTVEDRDTADRLLKFTITQVPVHGRLLFNNSRPVTSFTKQDLNENMISYKHDGT
ESAEDSFSFTVTDGTHTDFYIFPDTVFETRKPQTLKISILSVDNGVPQIVVNKGGATLRI
LSTGHLGFLITGKALKAEDRDSPQVAVTFRITVGPEHGYLISLGKGNVTVTTFTQADIDD
MHICYVLRDGDNATSDVFYFSIEDIGGNKLKNQQFRLNWAWISLEKEHYVADEESKALEV
VLKRRGYLGETSFVSIGTKDGTAEKDKDFRGKSQKQVQFNPGQTTATWKVRILSDNEYEL
SETFQIVLSEPVMGALEFPEVATVEIVDPGDESTVFIPSATYSIEEDIGELLIPVRRSGD
VSQELMVLCFTQQATATGTVPTSVLSYSDYISRPEEHSSMVRFDKDETEKPCRVVVIDDS
LYEPEESFNVSLSMPMGGRLGPEFPSTRVTILPDMDDAPVFYFGDTDYHVDESDGYVEVR
VWRTGTDLSKVGTVTVRSRKTDPVSAEAGLDYVGISRNLDFAPGVTMQTIRVTILDDLGQ
PVLEGPEKFELVLRMPMNGIMGEPSKATIFINDSVSDLPKVQFRDAMYMGNENDGHISAL
VYRSGDISYRSTVRCYTRQGTAQVMMDFNERPNTVDSTITFLPDEVEKPCVLTLVDDTEH
EEVEELRLVLGSPRSESPFGASIGTQNETLVKIKDDADKAIIKFGETKFSVSEPKVAGQV
SVVKIPVIRVGDTSKVSVVRVHTKDGSASSGEDYHPVSEDVVFRAGDTQHYVEVEILYDS
VREMREAFTVHLKPDENMVAETQMNKAIIYIEETNSMADVTFPSVPIVVSLLQYDDTSRS
RDALPSSGYPVVCVTACNPKYPDFDKTGSICVSENINDTLTRYRWLISAPTGPDGVTSPM
REVDFDTFFTSSKLITLDSVYFQAGSRVQCAARAVNGDGDEGLELSSPVVSISVEEGMCQ
PRVVGTVGAEPFSARLRYTGADDPDHPNLIKLTVTMPHIDGMLPVVSTRPLSNFELTLSP
DGTRVGNHRCSNLLDHHEVQTRHGFLTEATRNPEVIGQTAPYQYSASLRGSNVLRFYRNL
NLEACLWEFVSYYDMSELLSDCGGTIGTDGQVLNLVQSYVTLRVPLHVSYVFHSPVGAGG
WQHFDLQSELRLTFVYDTAILWKDGIGSPPEAELQGAMYPTSMRINEQGRLVVNFRTEAR
FRGLFVVSHSASSLSSMVMCPDHPGVTFNLTLVRSEPTYNQPMQQWTFISDFSIRDYSGT
YTVKLLPCTAPPSLQYTIPPVCNPREPVTFDLDIRFQQVSDPVAAEFSLNTQMLLLSKRT
LWLSDGSMGFGQETDTAFAEGDIIYGRVMVDPVQNLGDSFICNIEKVFLCTGADGYVPKY
NPDNLEYGCLADASSLLYRFKIVDKAQPETQARAFGSVSFNALLAVDDPRALPLVRQPGS
DGFRVDSAPLFQVSTGREWYIHTIYTVRSRDNANRGIGKRSLEYHSLSFGLNSHSLTSDL
ALPTGGRSRRSANDVPAVADNIGADQSRGTNMLHIALDRSRSKQPRQPARERSGETREGV
LPQEVNQRDTEEDEQLVMIIGVMVGVLLTVLLAVVVAVMVSRSKQEDKMPGAAPRASSST
EPMVVRGPETSDDSSEV
NT seq
9414 nt
NT seq
+upstream
nt +downstream
nt
atggctttgaatatttccctgcagcggcacgggattcctacagtcggtgttctcttccac
ttacttgtgagtgcattgactttgacaggttatgcatcggcacaggtctttgacagtttg
ggattatcatatggtttgagaacggacctctcagaggatgctatattggtggcaaacaat
ggaatacgcgtgccttttggaagatccagttttgttgatcctatcaacgatttggttatc
caagttcagcccggagacaaatgcagcataaccgtgttggataatgatcccttgtcacag
agaccggggctgctttccccgaaaaagtttccgtgtgaattcggtccgaacgatgtgaag
tactcgcacttcggctccaggagcccggcgaaggacagggtgaggctacaactccgctat
gacacccaaactgatacagtcattataccgttcatgatggaggttgaggtaatctttacg
cagttggaagtattgaccagaaacatgcctctcactgttgacaagctattaggagcaagt
aaccctattgataacaaaatattggaatttacttatgacagaaatgcatatcaatgtaaa
ctcgcatcactcgccagtggaagtacattgcccagatatggcaaacttattgatgagggg
aaactgggaaagatgttggactgtgatgaatttctcagactcaacattcgttatcagcac
acgtttgcccatcgttcccctaacagagattatattccaatgtttgtagagttacaagac
aaagagggcaacataataaatcaagagtttttccaacttatggtgcgcataagagagggg
gaggagaacactgctcctaagcccagttttgtggctatgatgatgatggaggtagaccag
tttgtaatgacagccattactcctgatatgctggccgcagaggacattgaatccaatcca
gatgatttaatatttaatatcacgtccccattgtcttttgaagagggctacatagtgagc
acagacgataggaatctgccaatcacttctttctatcagagggatttgaaggagctgaaa
atagcctataagccgccctctgtggattcagacggtgagcgaattttccaaatcgagttt
gaggttgtggacactgaggcagccgtctctgacccctttgcgttcatgattgtagtcaag
ccaatgaacactctggctcctgtggtgacccgaaatacaggacagctgttgtatgaggga
caatccaggccactatctagctcacacaatttagaaatcagtgatgaggacaatctggac
agtgtgagagtcagcgtaattgatgggcttaggcacgggcatctaactgttttggggtcc
cggaggaagtttttcactcctgccgacctggataatggtgtggttatctaccagcatgac
ggcagtgacacctacagtgacaacatcatttttaggatgacggacggcaaacatgaagtg
gaattcctgttccccatcaccgtggtgccaacagatgacgagccgccaatcatcaatgcc
aacacgggactggtgctgttcaaaaaccagatgatgccaatctcacctctgacgcttagt
gctgctgacatcgattcagaggattccactattaagttcatcatccagccccctttctcc
acaataggggaggtactactgcggcagtccgaggccccggaagacccatctacatggagg
ttcaatgctgaggacgagctgtatgagaaatcagtgacagagtggctacagcaagacatc
actgatggcaagctcttctacaggcacatcgggcctcacatcaccgaaccagtcatggac
cagtttgtgttccgcgtccaggatgacaacgaccctcccaatcaatcgggggaaagctca
ttcgtcatcaaggttcttcccatcgatgacatccctcccgagctttacccaggcaccact
ctgcagatgaccgtccacgagtatcagctcacatactttcgcaagaagttcctgcgctac
acagacctagactccgaggaccgcgacctgaaatacacaatcacacagccacccactgac
acagacacaaacaaccctcttgtatttggctcaattgttctaactgaaagtgcggatgtt
caggtcacagaattcacccaggcgcaaatcaatcaccacaagatagcctacaagccacct
gacgtggagctggggatcatagcccacgtggtgcagtttacgttcacctgtgaagacacg
gctggaaatagcgccaccggatccttcaacatttatcttcagcctgtcgacaacaagcca
ccccagataaccaactctgggttcactgtgttggagggcagcacgcatgccattacaaga
gaggaattagacacccaggatcaagacactgacagcagtcagatttcattcactgtcatt
cagcctccacttcatggggtagtccagtatacattcactgacctgaccaaaggcgatgtg
tttaatttgagggacatttcagagggcaaaatctcatatgtgcataatggcgacgagtca
actagtgattatttccaaatagatgttagtgatggagtccacgttgtcacaattactgtc
agggtgactgtgaagccagttgatgatgagaaacccacaattagtctcccagccggcacc
ataggctctcacattgacgtgttagagaatggggccacggaaattacgaccagcgtcatt
cagggacgggacgaggacacggatgacctccgcctgaccttcatagtggaggaccctccc
gtgtttggagagattcttgtgaatggggtgcctgctgggaggttcacccaagccgacatc
atcaatggctttgtggtgtacgcccacaccgggggagagattggtctcaccaccaaggag
gactactttaatctgaccctcacggatatgtcagatgagtggacagtcgggggcaacaaa
gtcacaggggtcagagttcaagtcaccatactgcccctggatagccaggcccccgaggta
ttcgtaggccccttgttcagtgtagtggagggagagaaaaatgtcattgagatcctgcac
attagcgcagacgatgtcgacacacacaatgatgacctcctgtgtacaatcattgttcag
ccatcatctggctacatagaaaatatatctccagccccgggctcagaaaagtctaggtca
ggcacagccatcagcgcattcaccattaaggacatcaggcataaccacatttattatgtg
caaagtatccacaagggcgtggaacctgtggaggacaggttcactttcagatgctccgac
ggcattaattactcagagaagcatttcttccccatcatgattattccttccaatgacgaa
aagcctgagatgtacatgagggagtttgtggtgatggagggcatgaacattgtcatagac
acgccgatcttgaacgcagccgatgcagacgttccctccgacgaactgacattcataatc
accaaacccccgaagcacggagttatcctaaaccagttgacctctggcactgttccagtc
accaacttcacccttgaccagatccgagaggcctctagtattgtctatgagcatgatgac
tcagagaccacagaggatagtttcagcgtaattctcactgatggtaaattcacagtggag
aaggacgtcctgatcatggttattcctgttgatgatgaaacacctaggatggccattaac
gacggtctcgagatagagataggggacatcaaagtaatcaacaacagagttttaaaagcc
accgacttagactcagaggacagctcactgacatacgtcattcgctatggcccaaaccag
gggtttctacaaaggcagacaccatttggttatttggagaacatcacgatagggatgaat
ttcacacaaagtgaattagaccaagaccttatcatttacatacacaatggacaagaaggg
attcgtgatctgattaaattcgatgtcacagatggcattaaccctttaatagacagatac
ttctacgtcacagttggaagcatagacatggtcttccctgacattattagtaagggggtc
tctctgaaagaagggggaagggtgaccctgaccacagacctgctgagcaccagtgacctg
aacagccccgacgagcacctggtcttcaccatcactcgagcacccatgagggggcatctg
gagtgctctgacacccctggcatgcccatcagctcctttacgcaactgcatctggccgga
aacaagatctactacatacacaccgccgatgacgaggtcaagatggacagtttcgagttc
gaggtgacggatggctacaacccagtgttccgcaccttccgggtgtccatctcggacgtg
gataacaagaagccggtggtgaccgtgcacgggctggtggtcagcgagggggagaacaag
ctcatcactccgttcgaactgacagtggaggatcgggacacggcggaccggctattgaag
ttcaccatcacccaggttcctgtccacggcaggctgctcttcaacaacagccgcccagtc
acctccttcaccaagcaggacctgaatgaaaacatgatcagctacaagcacgatggcacc
gagtcagccgaagactccttctccttcactgtgaccgatgggacacacacagatttctac
atcttccccgacacggtgttcgagacgcgcaaaccccagactttgaaaatctccattctc
tccgtggacaacggcgttccacagatcgtagtcaacaaaggaggagcgactttaaggatt
ctgtccacgggtcacctggggttcctaatcacaggcaaggccctgaaagcggaggacaga
gacagtccccaagtggccgtcacctttcggatcacagtgggtccggagcatggctacctc
atcagcctgggcaaaggcaacgtcacagtcactacattcacacaagctgacatcgacgac
atgcatatatgctacgttctacgagatggagataacgccacgagtgatgtcttctacttc
tccatcgaggatatcggaggaaataagctgaagaaccagcagtttcggctcaactgggcc
tggatctccctggagaaggagcactacgtggcggatgaggagtccaaggccctggaggtg
gtgctgaagcggaggggctacctgggggagacatccttcgtcagcatcggcaccaaggac
ggcacagcggagaaggacaaggacttccggggcaagtcccagaagcaggtgcagtttaat
cctgggcagaccaccgctacctggaaggtgcgcatcctaagtgacaatgagtatgagctg
tcggagacgttccagattgttctgtccgagccagtcatgggggctctggagttccctgag
gtggccaccgtggagatcgtcgacccaggagatgagtccacagtgttcatcccctcggcc
acctactccatagaggaggacatcggagagctgctcatccccgtcagacgcagtggagac
gtcagccaggaactcatggttctctgctttacccagcaagccacggccacagggacggtg
cccaccagcgtgctctcctactcggactacatctcgcggccggaggagcactccagcatg
gtgcgcttcgacaaggacgagacggagaagccgtgccgcgtggtcgtcatcgacgactcg
ctctacgagcccgaggagagcttcaacgtctccctcagcatgcccatgggcggccgcttg
ggcccggaattcccctccaccagggtgaccatcctgcccgacatggacgacgcgcctgtt
ttctactttggtgatacggactaccatgtggacgagagcgacggctatgtggaggtgcgg
gtgtggaggacgggcacggacctctccaaggtgggcacggtgactgtgcgctcacggaaa
actgatcccgtgtcagctgaagctggtctggactacgttggcatcagccggaacctggac
ttcgcccctggggtcaccatgcagaccatccgggtcaccattctggacgacctgggccag
ccggttctggaggggcccgagaagttcgagctggtcctgcgcatgcccatgaacggcatc
atgggagagccgagcaaagccaccatcttcattaacgactccgtgtctgacttgccaaaa
gtccagttccgggatgccatgtacatgggcaacgagaatgacgggcacatctccgccctg
gtgtaccgcagcggcgacatcagctacagatccaccgtgcgctgctacacacgtcagggc
actgcccaagtcatgatggacttcaatgagagacccaacaccgtcgactccaccatcaca
ttcctgccagatgaggtagagaaaccatgtgtgcttacactggtggacgacacggagcac
gaggaggtggaggagctcaggctggtcttggggagcccgaggagcgagtctcctttcggg
gcttccatcggcacgcagaacgagacgctggtcaagataaaggatgacgctgacaaggcc
attatcaagtttggggaaacaaagttcagtgtgagcgagcccaaggtggccggccaggtg
tcggtggtgaagatcccagtgatccgtgtgggagacacatccaaggtgtccgtggtgcgc
gtgcacaccaaggacggctctgcatcctcgggggaagactaccacccagtgtctgaggat
gtcgtgttcagagcgggcgacactcagcactatgtggaggtggagatcctgtacgacagc
gtgcgcgagatgagggaggccttcaccgttcacctgaagcctgacgagaacatggtggcc
gagacacagatgaacaaagccatcatctacatcgaggaaaccaacagcatggcggacgtc
accttcccctccgtgcccatagtggtgtctctgctccagtacgatgacaccagcaggagc
agggatgccctcccgtcatctggatatcctgtggtctgtgtgacggcctgcaaccccaag
taccccgacttcgacaagacgggctccatctgcgtgagcgagaacatcaacgacacgctg
acgcgctaccgctggctcatcagcgcccccaccgggccagacggcgtcaccagccccatg
cgcgaggtggacttcgacaccttcttcacctcatccaagctgatcacgctggactccgtc
tacttccaggccggctcgcgggtgcagtgcgccgcccgtgccgtcaacggcgatggggac
gagggcctggagctgagcagccccgtggtgtccatcagcgtcgaggagggtatgtgccag
cctcgggtcgtgggcacggttggcgccgagcccttctccgccaggctgcgctacacggga
gccgacgacccggaccaccccaacctcatcaagctgactgtcacgatgccacacattgac
ggcatgttgcccgtggtctccacccggcccctgtccaacttcgagctgacgctgagcccc
gacggtacgcgcgtgggcaaccaccgctgctccaacctgctggaccaccacgaggtgcag
acgcgccacggcttcctcaccgaggccacgcgcaaccccgaggtgatcggccagaccgcg
ccctaccagtacagcgcctccctgaggggctccaacgtactgcgcttctaccgcaacctc
aacctggaggcctgcctctgggagtttgtgagctactacgacatgtccgagctgctgagc
gactgcggcggaaccatcggaacggacggacaggtgctgaacctggtgcagtcctacgtg
accctgcgggtgccgctgcacgtgtcctacgtcttccactcgcccgtgggcgccgggggc
tggcagcacttcgacctgcagtccgagctgcggctcaccttcgtttacgacacggccatc
ttgtggaaggacggcatcggcagcccaccggaggcagagctccaaggggccatgtacccc
accagcatgcgcatcaatgagcagggccggctggtggtcaacttccgcacggaggcgcga
ttcaggggtctgtttgtggtttcacactcagcatcctctctgtcctccatggtcatgtgc
ccggatcaccctggagtgacctttaaccttacactggtgcgcagtgagcccacctacaac
caacccatgcagcagtggaccttcatctctgacttctctatccgtgactactccggcacg
tatacggtgaagctgctcccctgcacggcccctcccagtctgcagtacaccatcccacct
gtgtgcaaccccagggagcccgtcacctttgaccttgacatccgcttccagcaggtgagt
gacccagtggcggctgagttcagcctgaacactcagatgctgctgctgtccaagcggact
ctgtggttgtctgacgggtccatgggttttggccaggagaccgacacagctttcgcagag
ggtgatatcatttacggccgtgtgatggtggaccccgtgcagaacctgggagattcgttc
atctgtaacatcgagaaagtgttcctgtgcacgggggcggatggctacgtgcccaaatac
aaccccgacaacttggagtacggctgcctggccgacgcctcctctctgctttacaggttc
aagatcgtggataaggcccagccggagacgcaggccagggcgttcgggagtgtgagcttc
aacgcacttctggctgtggacgacccccgcgccctgcccctggtgaggcagccaggctca
gacggcttcagagtcgactctgcacccctcttccaggtgtctactgggagggagtggtac
atccacaccatctacactgtgcgctcccgcgacaatgccaaccgtggcatcgggaagagg
agcctggagtaccacagcctgagcttcggtctcaactcccactctctaacctccgacctc
gctctccctacgggtggaaggtcgcggaggtcagccaacgacgtgcctgctgtggctgac
aacatcggggccgaccagagccggggcaccaacatgctccacatcgcgctggaccgctct
aggagcaagcagcctcggcagccggccagggagaggtcaggggagacgcgggagggggtc
ctcccgcaggaggtgaaccagagggacacagaggaggatgagcagctggtcatgatcatc
ggggtaatggtcggggtgctgctgaccgtgctcctggcggtggtggtcgcggtgatggtc
tcacgcagcaagcaggaggacaaaatgcccggcgccgcgccgcgggcgtcgagcagcact
gaaccgatggtggtgcgagggccggagaccagcgatgacagctcagaggtctga
DBGET
integrated database retrieval system
