Clupea harengus (Atlantic herring): 105909261
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Entry
105909261 CDS
T09045
Symbol
sptan1
Name
(RefSeq) spectrin alpha chain, non-erythrocytic 1 isoform X1
KO
K06114
spectrin alpha, non-erythrocytic (fodrin)
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04210
Apoptosis
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
105909261 (sptan1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
105909261 (sptan1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
char04812
]
105909261 (sptan1)
Cytoskeleton proteins [BR:
char04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
105909261 (sptan1)
Intermediate filaments
Intermediate filament-binding proteins
105909261 (sptan1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
EFhand_Ca_insen
SH3_1
SH3_9
EF-hand_1
EF-hand_7
EF-hand_6
SH3_2
EF-hand_8
SH3_3
SH3_10
SCO1-SenC
Tetrabrachion
Motif
Other DBs
NCBI-GeneID:
105909261
NCBI-ProteinID:
XP_031434269
Ensembl:
ENSCHAG00000019407
UniProt:
A0A6P8G4S1
LinkDB
All DBs
Position
12:complement(24430541..24471181)
Genome browser
AA seq
2544 aa
AA seq
DB search
MMSLPREKGIIFAPPPPPAISFGEVATRFHPVPVSRLNYIEEKMDASGVKVLETADDIQE
RRQQVLDRYRRFKELSTVRRQKLEDSYRFQFFRRDADELEKWILEKLQIASDENYKDPSN
LQGKLQKHQAFEAEVQANAGAIIKLDETGNLMISEGHFASETIRTRLEELHRLWDQLLQK
TKEKGVRLLQAQKLVQYLRECEDALDWISDKEAIVTSEELGQDLEHVQVLQKKFEEFQTD
LAAHEERVNDVNQTAGKLTQDAHPEAELIQRKQEEVNAAWQRLKGLSQQRQGKLFGAAEV
QRFNRDVDETISWIKEKEQLMASDDFGRDLASVQALLRKHEGLERDLAALEDKVNTLGGE
AERLQQTHPQNASQIHLKRDELITNWEQIRTLAAERHARLNDSYRLQRFTADFRDLTSWV
TEMKALINADELANDVAGAEALLDRHQEHKGEIDAHEDSFKAADEAGHCLLNTGHYASDE
VKEKLGILTEEKESLLELWELRRQQYEQCMDLQLFYRDTEQVDNWMSKQEAFLLNEDLGD
SLDSVEALLKKHEDFEKSLSAQEEKITALDEFATKLIQNNHYAKEDVATRRDALLSRRNA
LHERAQSRRAALEDSFHLQQFFRDSDELKSWINEKMKTATDEAYKDPSNLQGKVQKHQAF
EAELSANQSRIDALQKSGQELIDGNHYASDEVSGRMDEVSTQWKKLLEATELKGIKLREA
NQQQQFNRNVEDIELWLYEVEGHLASDDYGKDLTSVQNLQKKHALLEADVAAHQDRIDGI
TIQARQFQEAGHFDADNIRKKQEALVARYEALKEPMAARKQKLSDSLRLQQLFRDVEDEE
TWIREKEPIAASTNRGKDLIGVQNLLKKHQALQAEIAGHEPRIKAVSQKGEAMVEEGHFA
GEEVKVKLGELNGRWDTLKGKAGQRRQDLEDSLQAQQYFADANEAESWMREKEPIVGSPD
YGKDEDSAEALLKKHEALMSDLSAYGSSISSLKEQATSCRQQVAPTDDETGKELVLALYD
YQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPTQSSSRENLLD
EQGSIALRQEQIENQTLVTKEACSVSVRMKQVEDLYGTLQELGEKRKDMLEKSCKKFMLF
REANELQQWIGEKEGALTNEEVGSDLEQVEVLQKKFDDFQKDLKANESRLRDINKVASEL
ESEGLMAEEAAVVQAQQQEMLGSAPGKDEADSKNASPWKSVRMAVQTTANFNTIKELNNR
WRALQQLAEERSNMLGSAHEVQRFHRDADETKEWIEEKNQALNTDNYGHDLASVQALQRK
HEGFERDLAALGDKVNSLGETAERLIQSHPEAVDDIKEKCTELNTAWSSLVGRADQRKDK
LGNSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGT
FQAFEQFGQQLLARGHYASPEIQQKLEALDRERADLEKAWVQRRMMLDQCLELQLFNRDC
EQAENWMAAREAFLASDDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQSFADQLIGA
DHYARPEILDRRNEVLDRWRRLKAQMIEKRSKLGESQTLQQFSRDVDEIEAWISEKLQTA
SDESYKDPTNIQLSKLLSKHQKHQAFEAELHANADRIRGVIDTGNALITRGACAGSEDAV
KSRLNALDEQWQFLVNKSAEKSQKLKEANKQQNFNTGIKDFDFWLSEVEALLASEDYGKD
LASVNNLLKKHQLLEADISAHEDRLKDLNGQADSLMGSQAFDTTQVKDKRDAVNGRFGKI
KSMAGGRRAKLNESHRLHQFFRDLDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRL
EAELGAHEPAIQSVLDTGKKLSDDNTIGQEEIQQRLAQFVEHWKELKDLAAARGQRLEES
LEYQQFVANVEEEEAWINEKLNLVGSEDYGDTLAAVQGLLKKHEAFETDFTVHRDRVNDV
CANGDELIKKNNHHVDNITAKMNALKGKVTELERAAAQRKAKLDENSAFLQFNWKADVVE
SWIGEKENSLKTDDYGRDLSSVQTLLTKQETFDAGLQAFQQEGITNITALKDQLLAAKHV
QSRAIEARHATLMKRWNQLLSNSDARKKKLLEAQDHFRKVEDLFLTFAKKASAFNSWFEN
AEEDLTDPVRCNSLEEIRALRDAHDAFRASLSSAEADFNQLAELDRQIKSYHVVSNPYTW
FTMEALDETWRNLQKIIKERELELQKEQRRQEENDKLRQEFAQHANAFHQWLQETRTYLL
DGIAYRRVIRVYQYEVDDDLSGRSCMVEESGTLESQLEATKRKHQEIRAMRSQLKKIEDL
GAAMEEALILDNKYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNTTGVTEEALKEF
SMMFKHFDKEKSGRLNHQEFKSCLRSLGYDLPMVEEGEPDPEFESILDTVDPNRDGNVSL
QEYMAFMISRETENVKSSEEIESAFRALSAENKPFVTKEELYQNLTKEQADYCISHMKPY
LDSKGRELPTSFDFVEFTRSLFVN
NT seq
7635 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcactccctcgcgaaaagggtattatatttgctcccccgccaccaccagctatt
tcattcggggaggttgccacccgttttcatccagtcccagtaagcagactaaactacatt
gaagagaagatggatgcaagtggggtgaaagtcctggagacggccgacgacatccaggag
cgccggcagcaggtgctggaccgataccggcgcttcaaggagttgtcgaccgtgcgccgg
cagaagctggaggactcgtaccgcttccagttcttccgccgcgatgctgacgagctggag
aagtggatcctggaaaagctgcagatcgcttccgatgagaactacaaggaccctagcaac
ctgcagggaaagctccagaaacaccaggcctttgaggcggaggtgcaggccaatgctggg
gccatcatcaaactggacgaaacgggcaacctgatgatctctgagggtcactttgcctcc
gaaaccatccggacgcgtctggaggagctgcaccgcctgtgggaccagctgctgcagaag
accaaggagaagggcgtgcgtctgctgcaggcccagaagctggtgcagtacctgcgcgag
tgcgaggatgccctcgactggatcagcgacaaggaggccatcgtcacctccgaggagctg
ggtcaggacctggagcacgtgcaggtgctgcagaagaagttcgaggagttccagacggac
ctggcggcgcacgaggagcgcgtgaacgacgtgaaccagacggctggcaagctgacccaa
gacgcccaccccgaggccgagctgatccagcgcaagcaggaggaggtgaacgccgcctgg
cagcgcctcaagggcctgtcacagcagaggcagggcaagctgttcggtgccgccgaggtg
cagcgcttcaacagggatgtggatgagaccatcagctggatcaaggagaaggagcagctg
atggcgtcggatgatttcggcagggatctggccagcgttcaggcactgctgcgcaaacac
gagggactggagagagacctggctgccctggaggacaaggtgaacactcttggcggcgag
gccgagcgcctgcagcagacccacccccagaacgcctctcagatccacctgaagcgggac
gagctcatcaccaactgggagcagatccgcacgctggccgccgagcgccacgcccgcctc
aacgactcctacaggctgcagcgcttcaccgctgacttccgtgacctgacgagctgggtg
acggagatgaaggccctgatcaacgctgacgagctggccaatgatgtggccggagccgag
gcgttgctcgaccgccaccaggagcacaagggagagattgacgctcatgaggatagcttc
aaggccgccgatgaagccggccattgtttgctcaacaccggacactacgcttctgatgag
gtcaaagagaagctgggcatcctgactgaggagaaggagtctctgctggagctgtgggag
ctgcgcaggcagcagtatgagcagtgcatggacctgcagctcttctacagggacacggag
caggtggacaactggatgagcaaacaggaggcgttcctgctgaacgaggacctgggagac
tccctggacagcgtggaggccctgctgaagaagcacgaggactttgagaaatccctcagc
gcccaggaggagaagatcactgccctggatgagtttgccaccaagctgatccagaacaac
cattacgccaaggaggatgtggccactcgccgagatgctctgctgagccgacgcaacgcc
ctccatgagcgcgctcagtcccgccgtgccgccctggaagactccttccacctgcagcag
ttcttccgcgactctgacgagctcaagagctggatcaacgagaagatgaagaccgccact
gacgaggcctacaaggacccctccaacctgcagggcaaagtgcagaagcaccaggccttc
gaggccgagctctcagccaaccagagccgcatcgatgccctgcagaagtccggccaggag
ctgatcgacggcaaccactacgcctccgacgaggtgtccgggcgcatggacgaggtcagc
acccagtggaagaagcttctggaagccaccgagctcaaaggcatcaagctgcgtgaggcc
aaccagcagcagcagttcaaccgcaacgtggaggacatcgagctctggctgtacgaggtg
gagggccacctggcgtccgacgactacggcaaagacctgaccagcgtgcagaacctgcag
aagaagcacgctcttctggaggctgacgtcgctgcccaccaggaccgcattgacggcatc
accatccaggcccgtcagttccaggaggcaggtcactttgacgccgacaacatccgcaag
aagcaggaggcgctggtagcccgctacgaggccctgaaggagcccatggccgcccgcaag
cagaagctctccgactcgctgcgtctgcagcagctcttcagggacgtggaggacgaggag
acctggatccgtgagaaggagcccatcgccgcctccaccaacagaggcaaagacctgatt
ggagtgcagaacctgctgaagaagcaccaggccctgcaggctgagattgctggacacgag
ccccgcatcaaggccgtctcccagaagggcgaggccatggtggaggaaggccactttgct
ggggaggaagtgaaggtgaagctgggcgagttgaacggccgctgggacaccctgaagggc
aaggctggccagcgccggcaggacctggaggactctctgcaggcccagcagtactttgcc
gacgccaacgaggccgagtcctggatgagggagaaggagcccatcgtggggagccccgac
tacggcaaagacgaggactctgctgaggctctgctgaagaagcacgaggctctgatgtct
gacctgagtgcctacggcagcagcatctcgtccctgaaggagcaggccacgtcctgcaga
caacaagtggcccccacggatgatgagaccggtaaggagctggtgctggccctctatgac
taccaggagaagagcccccgcgaggtcaccatgaagaagggggacatcctcaccctgctc
aacagcaccaacaaggactggtggaaagtggaagtgaacgaccgccagggctttgtgccc
gcggcctacgtgaagaagctggacccgacccagtcgtcctctcgggagaaccttctggac
gagcagggcagcatcgctctgcgtcaggagcagatcgagaaccaaacgctggtcaccaag
gaagcgtgcagtgtgtctgtgcgcatgaagcaggtggaggacctgtacggcaccctgcag
gagctgggcgagaagaggaaggacatgctggagaagagctgcaagaagttcatgttgttc
cgcgaggccaacgagctgcagcagtggatcggcgagaaggagggcgccctcaccaacgag
gaagtgggctccgacctggagcaggtggaggtgctccagaagaagttcgacgacttccag
aaggacctgaaggccaacgagtctcgcctgagggacatcaacaaggtggcgtccgagctg
gagtccgagggcctgatggccgaggaggccgctgtggtccaggcccagcaacaagagatg
ttgggctcagcacctggcaaggatgaagcagactctaagaatgcctccccatggaagtcc
gttcgcatggctgtccaaacgacggctaactttaataccattaaggagctgaataatcgc
tggagggctctgcagcagctggccgaggagaggagcaacatgctgggcagcgctcatgag
gtgcagaggttccacagggatgctgatgagactaaggagtggatcgaggagaagaaccag
gctctgaacactgataactacggccacgacctggccagcgtgcaggccctgcagcgcaaa
cacgaaggcttcgagagagacctggcagccctgggagacaaggtgaactctctgggcgag
acggccgagcggctgatccagtcgcaccccgaggcggtggacgacatcaaggagaagtgc
accgagctcaacaccgcctggagcagcctggtgggccgcgccgaccagcgcaaggacaag
ctgggcaactcccacgacctgcagcgcttcctcagcgacttcagagacctgatgtcctgg
atcaacggcatcagggggctggtgtcctcagacgagctggccaaggacgtgaccggagca
gaggcgctgctggagagacaccaggagcaccgcactgagatcgatgcccgtgcgggcacc
ttccaggcctttgagcagtttgggcagcagctgctggcccgcgggcactacgccagccct
gagatccagcagaagctggaggcgctggaccgcgagcgggccgacctggagaaggcctgg
gtgcagcgcaggatgatgctggaccagtgcctggagctgcagttgttcaacagggactgc
gagcaggcggagaactggatggcagcgcgcgaggccttcctggccagcgacgacaaagga
gactctctggacagcgtggaggccctcatcaagaagcacgaggacttcgacaaggccatc
aacgtccaggaggagaagattgcagccctgcagtctttcgctgaccagctgattggagca
gaccactacgccaggccagagatccttgaccgccgcaatgaggtgttggacagatggcgc
cgcttgaaggctcagatgattgagaagcgctccaagctgggagagtcgcagactctgcag
cagttcagccgagacgtggacgagatcgaggcctggatcagcgagaaactgcagacggct
tctgacgagtcctacaaagaccccaccaacatccagctgtccaagctgctgagcaagcac
cagaagcaccaggccttcgaggccgagctccacgccaacgccgaccgtatccgcggcgtg
atcgacaccggcaacgctcttatcacgagaggagcctgtgccggcagcgaggatgccgtc
aagtcccgtctcaacgccctggacgagcagtggcagttcctggtgaacaagtctgctgag
aagagtcagaagctgaaggaggccaacaagcagcagaacttcaacacgggcatcaaggac
ttcgacttctggctgtctgaggttgaggctctgctggcctctgaggactatggcaaagac
ctggcctcagtcaacaacctgctgaagaagcaccagctgctggaggctgacatctctgcc
catgaggaccgcctgaaggatctgaatggccaggctgacagcctgatgggcagccaggcc
ttcgacaccacacaggtgaaggacaagcgcgacgctgtcaacggccgcttcggcaagatc
aagagcatggctggaggccgccgtgccaagctcaacgagtcgcaccgcctgcaccagttc
ttcagagacctggacgacgaggagtcgtggatcaaagaaaagaaattgcttgtgagctcg
gaggattatggacgtgatttgacaggagtgcagaatctgaggaagaaacataagaggttg
gaggctgagcttggcgcccacgagccggccattcagtctgtgctggacactggcaagaag
ctgtcggatgacaacaccattggccaggaggagatccagcagaggctggcccagtttgtg
gagcattggaaggagctgaaggacttggctgctgcccgcgggcagagactggaagagtcg
ctggagtaccagcagtttgttgcgaatgtggaagaagaggaagcatggatcaatgagaag
ctgaatctggttggaagtgaagactacggtgatacgctggccgctgtgcagggcttgctg
aagaaacacgaggcgtttgagactgactttactgtgcatagggaccgagtgaacgacgta
tgtgccaacggagatgagctcatcaagaagaacaaccaccacgtggacaacatcacggcc
aagatgaacgccctgaaggggaaggtgaccgagctggagagggccgccgcccagaggaag
gccaagctggacgagaactctgccttcctgcagttcaactggaaggccgacgtggtggag
tcctggatcggtgagaaggaaaacagcctgaagactgatgactatggccgtgacctgtcc
tccgtgcagaccctgctcaccaagcaggagacctttgatgctggtctgcaggccttccag
caggagggcatcaccaacatcaccgccctcaaggaccagctgctggccgccaaacacgtg
cagtcccgtgccatcgaggctcgccacgccacgctcatgaagcgctggaaccagctgctg
tccaactcggacgcccgcaagaagaagcttctggaagctcaggatcacttcagaaaggtg
gaggacctgttcctgaccttcgccaagaaggcgtcggccttcaacagctggtttgagaac
gcagaagaagaccttacggacccggtgcgctgcaactcgctggaggagatccgggcgctg
cgcgacgcccacgacgccttccgcgcctcgctcagctccgccgaggccgacttcaaccag
ctggccgagctggaccggcagatcaagagctaccacgtggtgtccaacccctacacctgg
ttcaccatggaggccttggacgagacctggaggaacctgcagaagatcatcaaggagcga
gagctggagctccagaaggagcagaggcgccaggaggagaatgacaagctgcggcaggag
tttgcccagcacgccaacgccttccaccagtggctacaggagacaaggacatacctcctg
gatggcatagcctatcgacgggttatccgtgtctatcagtacgaggtcgatgatgatctt
tcaggaaggtcctgcatggtggaagaatccggaactctggagtcacagctggaggccacc
aagcgtaagcaccaggagatccgtgccatgcgcagccagctgaagaagatcgaggacctg
ggggcggccatggaggaggcgctgatcctggacaacaagtacacggaacacagcaccgtg
ggcctggcccagcagtgggaccagctggaccagctaggcatgaggatgcagcacaacctg
gagcaacagattcaggccagaaacacaacaggtgtgacagaagaggcgttgaaggagttc
agcatgatgttcaagcacttcgacaaagagaagtccggtcgtctcaaccaccaggagttc
aagtcgtgcttacgttccctgggttacgacctgcccatggtggaagaaggagaaccagat
cccgagtttgaatccatattggacacggtggatcccaacagggatggcaacgtgtccttg
caggagtacatggccttcatgatcagtcgcgagacagagaacgtcaagtccagcgaggag
atcgaaagcgccttccgtgccctcagcgccgagaacaaaccgttcgtcaccaaggaagaa
ctctaccagaacctgaccaaggaacaggcagactactgcatctcccacatgaagccctac
ctcgacagcaagggccgagagctgccaacctccttcgacttcgtggaattcactcgctcg
cttttcgtcaattaa
DBGET
integrated database retrieval system
