Clupea harengus (Atlantic herring): 105909261
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Entry
105909261 CDS
T09045
Symbol
sptan1
Name
(RefSeq) spectrin alpha chain, non-erythrocytic 1 isoform X1
KO
K06114
spectrin alpha, non-erythrocytic (fodrin)
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04210
Apoptosis
char04517
IgSF CAM signaling
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
105909261 (sptan1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
105909261 (sptan1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
105909261 (sptan1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
char04812
]
105909261 (sptan1)
Cytoskeleton proteins [BR:
char04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
105909261 (sptan1)
Intermediate filaments
Intermediate filament-binding proteins
105909261 (sptan1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
EFhand_Ca_insen
SH3_1
SH3_9
EF-hand_7
EF-hand_1
EF-hand_6
SH3_2
EF-hand_8
SH3_3
SH3_10
EF-hand_FSTL1
Tetrabrachion
Motif
Other DBs
NCBI-GeneID:
105909261
NCBI-ProteinID:
XP_031434269
Ensembl:
ENSCHAG00000019407
UniProt:
A0A6P8G4S1
LinkDB
All DBs
Position
12:complement(24430541..24471181)
Genome browser
AA seq
2544 aa
AA seq
DB search
MMSLPREKGIIFAPPPPPAISFGEVATRFHPVPVSRLNYIEEKMDASGVKVLETADDIQE
RRQQVLDRYRRFKELSTVRRQKLEDSYRFQFFRRDADELEKWILEKLQIASDENYKDPSN
LQGKLQKHQAFEAEVQANAGAIIKLDETGNLMISEGHFASETIRTRLEELHRLWDQLLQK
TKEKGVRLLQAQKLVQYLRECEDALDWISDKEAIVTSEELGQDLEHVQVLQKKFEEFQTD
LAAHEERVNDVNQTAGKLTQDAHPEAELIQRKQEEVNAAWQRLKGLSQQRQGKLFGAAEV
QRFNRDVDETISWIKEKEQLMASDDFGRDLASVQALLRKHEGLERDLAALEDKVNTLGGE
AERLQQTHPQNASQIHLKRDELITNWEQIRTLAAERHARLNDSYRLQRFTADFRDLTSWV
TEMKALINADELANDVAGAEALLDRHQEHKGEIDAHEDSFKAADEAGHCLLNTGHYASDE
VKEKLGILTEEKESLLELWELRRQQYEQCMDLQLFYRDTEQVDNWMSKQEAFLLNEDLGD
SLDSVEALLKKHEDFEKSLSAQEEKITALDEFATKLIQNNHYAKEDVATRRDALLSRRNA
LHERAQSRRAALEDSFHLQQFFRDSDELKSWINEKMKTATDEAYKDPSNLQGKVQKHQAF
EAELSANQSRIDALQKSGQELIDGNHYASDEVSGRMDEVSTQWKKLLEATELKGIKLREA
NQQQQFNRNVEDIELWLYEVEGHLASDDYGKDLTSVQNLQKKHALLEADVAAHQDRIDGI
TIQARQFQEAGHFDADNIRKKQEALVARYEALKEPMAARKQKLSDSLRLQQLFRDVEDEE
TWIREKEPIAASTNRGKDLIGVQNLLKKHQALQAEIAGHEPRIKAVSQKGEAMVEEGHFA
GEEVKVKLGELNGRWDTLKGKAGQRRQDLEDSLQAQQYFADANEAESWMREKEPIVGSPD
YGKDEDSAEALLKKHEALMSDLSAYGSSISSLKEQATSCRQQVAPTDDETGKELVLALYD
YQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPTQSSSRENLLD
EQGSIALRQEQIENQTLVTKEACSVSVRMKQVEDLYGTLQELGEKRKDMLEKSCKKFMLF
REANELQQWIGEKEGALTNEEVGSDLEQVEVLQKKFDDFQKDLKANESRLRDINKVASEL
ESEGLMAEEAAVVQAQQQEMLGSAPGKDEADSKNASPWKSVRMAVQTTANFNTIKELNNR
WRALQQLAEERSNMLGSAHEVQRFHRDADETKEWIEEKNQALNTDNYGHDLASVQALQRK
HEGFERDLAALGDKVNSLGETAERLIQSHPEAVDDIKEKCTELNTAWSSLVGRADQRKDK
LGNSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGT
FQAFEQFGQQLLARGHYASPEIQQKLEALDRERADLEKAWVQRRMMLDQCLELQLFNRDC
EQAENWMAAREAFLASDDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQSFADQLIGA
DHYARPEILDRRNEVLDRWRRLKAQMIEKRSKLGESQTLQQFSRDVDEIEAWISEKLQTA
SDESYKDPTNIQLSKLLSKHQKHQAFEAELHANADRIRGVIDTGNALITRGACAGSEDAV
KSRLNALDEQWQFLVNKSAEKSQKLKEANKQQNFNTGIKDFDFWLSEVEALLASEDYGKD
LASVNNLLKKHQLLEADISAHEDRLKDLNGQADSLMGSQAFDTTQVKDKRDAVNGRFGKI
KSMAGGRRAKLNESHRLHQFFRDLDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRL
EAELGAHEPAIQSVLDTGKKLSDDNTIGQEEIQQRLAQFVEHWKELKDLAAARGQRLEES
LEYQQFVANVEEEEAWINEKLNLVGSEDYGDTLAAVQGLLKKHEAFETDFTVHRDRVNDV
CANGDELIKKNNHHVDNITAKMNALKGKVTELERAAAQRKAKLDENSAFLQFNWKADVVE
SWIGEKENSLKTDDYGRDLSSVQTLLTKQETFDAGLQAFQQEGITNITALKDQLLAAKHV
QSRAIEARHATLMKRWNQLLSNSDARKKKLLEAQDHFRKVEDLFLTFAKKASAFNSWFEN
AEEDLTDPVRCNSLEEIRALRDAHDAFRASLSSAEADFNQLAELDRQIKSYHVVSNPYTW
FTMEALDETWRNLQKIIKERELELQKEQRRQEENDKLRQEFAQHANAFHQWLQETRTYLL
DGIAYRRVIRVYQYEVDDDLSGRSCMVEESGTLESQLEATKRKHQEIRAMRSQLKKIEDL
GAAMEEALILDNKYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNTTGVTEEALKEF
SMMFKHFDKEKSGRLNHQEFKSCLRSLGYDLPMVEEGEPDPEFESILDTVDPNRDGNVSL
QEYMAFMISRETENVKSSEEIESAFRALSAENKPFVTKEELYQNLTKEQADYCISHMKPY
LDSKGRELPTSFDFVEFTRSLFVN
NT seq
7635 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcactccctcgcgaaaagggtattatatttgctcccccgccaccaccagctatt
tcattcggggaggttgccacccgttttcatccagtcccagtaagcagactaaactacatt
gaagagaagatggatgcaagtggggtgaaagtcctggagacggccgacgacatccaggag
cgccggcagcaggtgctggaccgataccggcgcttcaaggagttgtcgaccgtgcgccgg
cagaagctggaggactcgtaccgcttccagttcttccgccgcgatgctgacgagctggag
aagtggatcctggaaaagctgcagatcgcttccgatgagaactacaaggaccctagcaac
ctgcagggaaagctccagaaacaccaggcctttgaggcggaggtgcaggccaatgctggg
gccatcatcaaactggacgaaacgggcaacctgatgatctctgagggtcactttgcctcc
gaaaccatccggacgcgtctggaggagctgcaccgcctgtgggaccagctgctgcagaag
accaaggagaagggcgtgcgtctgctgcaggcccagaagctggtgcagtacctgcgcgag
tgcgaggatgccctcgactggatcagcgacaaggaggccatcgtcacctccgaggagctg
ggtcaggacctggagcacgtgcaggtgctgcagaagaagttcgaggagttccagacggac
ctggcggcgcacgaggagcgcgtgaacgacgtgaaccagacggctggcaagctgacccaa
gacgcccaccccgaggccgagctgatccagcgcaagcaggaggaggtgaacgccgcctgg
cagcgcctcaagggcctgtcacagcagaggcagggcaagctgttcggtgccgccgaggtg
cagcgcttcaacagggatgtggatgagaccatcagctggatcaaggagaaggagcagctg
atggcgtcggatgatttcggcagggatctggccagcgttcaggcactgctgcgcaaacac
gagggactggagagagacctggctgccctggaggacaaggtgaacactcttggcggcgag
gccgagcgcctgcagcagacccacccccagaacgcctctcagatccacctgaagcgggac
gagctcatcaccaactgggagcagatccgcacgctggccgccgagcgccacgcccgcctc
aacgactcctacaggctgcagcgcttcaccgctgacttccgtgacctgacgagctgggtg
acggagatgaaggccctgatcaacgctgacgagctggccaatgatgtggccggagccgag
gcgttgctcgaccgccaccaggagcacaagggagagattgacgctcatgaggatagcttc
aaggccgccgatgaagccggccattgtttgctcaacaccggacactacgcttctgatgag
gtcaaagagaagctgggcatcctgactgaggagaaggagtctctgctggagctgtgggag
ctgcgcaggcagcagtatgagcagtgcatggacctgcagctcttctacagggacacggag
caggtggacaactggatgagcaaacaggaggcgttcctgctgaacgaggacctgggagac
tccctggacagcgtggaggccctgctgaagaagcacgaggactttgagaaatccctcagc
gcccaggaggagaagatcactgccctggatgagtttgccaccaagctgatccagaacaac
cattacgccaaggaggatgtggccactcgccgagatgctctgctgagccgacgcaacgcc
ctccatgagcgcgctcagtcccgccgtgccgccctggaagactccttccacctgcagcag
ttcttccgcgactctgacgagctcaagagctggatcaacgagaagatgaagaccgccact
gacgaggcctacaaggacccctccaacctgcagggcaaagtgcagaagcaccaggccttc
gaggccgagctctcagccaaccagagccgcatcgatgccctgcagaagtccggccaggag
ctgatcgacggcaaccactacgcctccgacgaggtgtccgggcgcatggacgaggtcagc
acccagtggaagaagcttctggaagccaccgagctcaaaggcatcaagctgcgtgaggcc
aaccagcagcagcagttcaaccgcaacgtggaggacatcgagctctggctgtacgaggtg
gagggccacctggcgtccgacgactacggcaaagacctgaccagcgtgcagaacctgcag
aagaagcacgctcttctggaggctgacgtcgctgcccaccaggaccgcattgacggcatc
accatccaggcccgtcagttccaggaggcaggtcactttgacgccgacaacatccgcaag
aagcaggaggcgctggtagcccgctacgaggccctgaaggagcccatggccgcccgcaag
cagaagctctccgactcgctgcgtctgcagcagctcttcagggacgtggaggacgaggag
acctggatccgtgagaaggagcccatcgccgcctccaccaacagaggcaaagacctgatt
ggagtgcagaacctgctgaagaagcaccaggccctgcaggctgagattgctggacacgag
ccccgcatcaaggccgtctcccagaagggcgaggccatggtggaggaaggccactttgct
ggggaggaagtgaaggtgaagctgggcgagttgaacggccgctgggacaccctgaagggc
aaggctggccagcgccggcaggacctggaggactctctgcaggcccagcagtactttgcc
gacgccaacgaggccgagtcctggatgagggagaaggagcccatcgtggggagccccgac
tacggcaaagacgaggactctgctgaggctctgctgaagaagcacgaggctctgatgtct
gacctgagtgcctacggcagcagcatctcgtccctgaaggagcaggccacgtcctgcaga
caacaagtggcccccacggatgatgagaccggtaaggagctggtgctggccctctatgac
taccaggagaagagcccccgcgaggtcaccatgaagaagggggacatcctcaccctgctc
aacagcaccaacaaggactggtggaaagtggaagtgaacgaccgccagggctttgtgccc
gcggcctacgtgaagaagctggacccgacccagtcgtcctctcgggagaaccttctggac
gagcagggcagcatcgctctgcgtcaggagcagatcgagaaccaaacgctggtcaccaag
gaagcgtgcagtgtgtctgtgcgcatgaagcaggtggaggacctgtacggcaccctgcag
gagctgggcgagaagaggaaggacatgctggagaagagctgcaagaagttcatgttgttc
cgcgaggccaacgagctgcagcagtggatcggcgagaaggagggcgccctcaccaacgag
gaagtgggctccgacctggagcaggtggaggtgctccagaagaagttcgacgacttccag
aaggacctgaaggccaacgagtctcgcctgagggacatcaacaaggtggcgtccgagctg
gagtccgagggcctgatggccgaggaggccgctgtggtccaggcccagcaacaagagatg
ttgggctcagcacctggcaaggatgaagcagactctaagaatgcctccccatggaagtcc
gttcgcatggctgtccaaacgacggctaactttaataccattaaggagctgaataatcgc
tggagggctctgcagcagctggccgaggagaggagcaacatgctgggcagcgctcatgag
gtgcagaggttccacagggatgctgatgagactaaggagtggatcgaggagaagaaccag
gctctgaacactgataactacggccacgacctggccagcgtgcaggccctgcagcgcaaa
cacgaaggcttcgagagagacctggcagccctgggagacaaggtgaactctctgggcgag
acggccgagcggctgatccagtcgcaccccgaggcggtggacgacatcaaggagaagtgc
accgagctcaacaccgcctggagcagcctggtgggccgcgccgaccagcgcaaggacaag
ctgggcaactcccacgacctgcagcgcttcctcagcgacttcagagacctgatgtcctgg
atcaacggcatcagggggctggtgtcctcagacgagctggccaaggacgtgaccggagca
gaggcgctgctggagagacaccaggagcaccgcactgagatcgatgcccgtgcgggcacc
ttccaggcctttgagcagtttgggcagcagctgctggcccgcgggcactacgccagccct
gagatccagcagaagctggaggcgctggaccgcgagcgggccgacctggagaaggcctgg
gtgcagcgcaggatgatgctggaccagtgcctggagctgcagttgttcaacagggactgc
gagcaggcggagaactggatggcagcgcgcgaggccttcctggccagcgacgacaaagga
gactctctggacagcgtggaggccctcatcaagaagcacgaggacttcgacaaggccatc
aacgtccaggaggagaagattgcagccctgcagtctttcgctgaccagctgattggagca
gaccactacgccaggccagagatccttgaccgccgcaatgaggtgttggacagatggcgc
cgcttgaaggctcagatgattgagaagcgctccaagctgggagagtcgcagactctgcag
cagttcagccgagacgtggacgagatcgaggcctggatcagcgagaaactgcagacggct
tctgacgagtcctacaaagaccccaccaacatccagctgtccaagctgctgagcaagcac
cagaagcaccaggccttcgaggccgagctccacgccaacgccgaccgtatccgcggcgtg
atcgacaccggcaacgctcttatcacgagaggagcctgtgccggcagcgaggatgccgtc
aagtcccgtctcaacgccctggacgagcagtggcagttcctggtgaacaagtctgctgag
aagagtcagaagctgaaggaggccaacaagcagcagaacttcaacacgggcatcaaggac
ttcgacttctggctgtctgaggttgaggctctgctggcctctgaggactatggcaaagac
ctggcctcagtcaacaacctgctgaagaagcaccagctgctggaggctgacatctctgcc
catgaggaccgcctgaaggatctgaatggccaggctgacagcctgatgggcagccaggcc
ttcgacaccacacaggtgaaggacaagcgcgacgctgtcaacggccgcttcggcaagatc
aagagcatggctggaggccgccgtgccaagctcaacgagtcgcaccgcctgcaccagttc
ttcagagacctggacgacgaggagtcgtggatcaaagaaaagaaattgcttgtgagctcg
gaggattatggacgtgatttgacaggagtgcagaatctgaggaagaaacataagaggttg
gaggctgagcttggcgcccacgagccggccattcagtctgtgctggacactggcaagaag
ctgtcggatgacaacaccattggccaggaggagatccagcagaggctggcccagtttgtg
gagcattggaaggagctgaaggacttggctgctgcccgcgggcagagactggaagagtcg
ctggagtaccagcagtttgttgcgaatgtggaagaagaggaagcatggatcaatgagaag
ctgaatctggttggaagtgaagactacggtgatacgctggccgctgtgcagggcttgctg
aagaaacacgaggcgtttgagactgactttactgtgcatagggaccgagtgaacgacgta
tgtgccaacggagatgagctcatcaagaagaacaaccaccacgtggacaacatcacggcc
aagatgaacgccctgaaggggaaggtgaccgagctggagagggccgccgcccagaggaag
gccaagctggacgagaactctgccttcctgcagttcaactggaaggccgacgtggtggag
tcctggatcggtgagaaggaaaacagcctgaagactgatgactatggccgtgacctgtcc
tccgtgcagaccctgctcaccaagcaggagacctttgatgctggtctgcaggccttccag
caggagggcatcaccaacatcaccgccctcaaggaccagctgctggccgccaaacacgtg
cagtcccgtgccatcgaggctcgccacgccacgctcatgaagcgctggaaccagctgctg
tccaactcggacgcccgcaagaagaagcttctggaagctcaggatcacttcagaaaggtg
gaggacctgttcctgaccttcgccaagaaggcgtcggccttcaacagctggtttgagaac
gcagaagaagaccttacggacccggtgcgctgcaactcgctggaggagatccgggcgctg
cgcgacgcccacgacgccttccgcgcctcgctcagctccgccgaggccgacttcaaccag
ctggccgagctggaccggcagatcaagagctaccacgtggtgtccaacccctacacctgg
ttcaccatggaggccttggacgagacctggaggaacctgcagaagatcatcaaggagcga
gagctggagctccagaaggagcagaggcgccaggaggagaatgacaagctgcggcaggag
tttgcccagcacgccaacgccttccaccagtggctacaggagacaaggacatacctcctg
gatggcatagcctatcgacgggttatccgtgtctatcagtacgaggtcgatgatgatctt
tcaggaaggtcctgcatggtggaagaatccggaactctggagtcacagctggaggccacc
aagcgtaagcaccaggagatccgtgccatgcgcagccagctgaagaagatcgaggacctg
ggggcggccatggaggaggcgctgatcctggacaacaagtacacggaacacagcaccgtg
ggcctggcccagcagtgggaccagctggaccagctaggcatgaggatgcagcacaacctg
gagcaacagattcaggccagaaacacaacaggtgtgacagaagaggcgttgaaggagttc
agcatgatgttcaagcacttcgacaaagagaagtccggtcgtctcaaccaccaggagttc
aagtcgtgcttacgttccctgggttacgacctgcccatggtggaagaaggagaaccagat
cccgagtttgaatccatattggacacggtggatcccaacagggatggcaacgtgtccttg
caggagtacatggccttcatgatcagtcgcgagacagagaacgtcaagtccagcgaggag
atcgaaagcgccttccgtgccctcagcgccgagaacaaaccgttcgtcaccaaggaagaa
ctctaccagaacctgaccaaggaacaggcagactactgcatctcccacatgaagccctac
ctcgacagcaagggccgagagctgccaacctccttcgacttcgtggaattcactcgctcg
cttttcgtcaattaa
DBGET
integrated database retrieval system
