KEGG   Clupea harengus (Atlantic herring): 105909275
Entry
105909275         CDS       T09045                                 
Name
(RefSeq) collagen alpha-4(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04382  Cornified envelope formation
char04510  Focal adhesion
char04512  ECM-receptor interaction
char04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:char00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    105909275
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    105909275
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    105909275
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    105909275
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:char04147]
    105909275
   00536 Glycosaminoglycan binding proteins [BR:char00536]
    105909275
Exosome [BR:char04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   105909275
Glycosaminoglycan binding proteins [BR:char00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   105909275
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 105909275
NCBI-ProteinID: XP_042564725
UniProt: A0A8M1KQ34
LinkDB
Position
9:complement(4382917..4398263)
AA seq 967 aa
MTPPGPPGFSGDPGRWGPEGPSIDGPPGQPGSIGSQGLKGPNGASIPGPPGQMGPEGNPG
FSGATGTRGLLGPSGPTGLPGRDGVPGEKGETGAQGCSGRVGPKGETPPCDDGPPGPPGS
PGCKGFDGPQGLKGDIGLKGEPGLPGRGPPGPPGKPGNPGTPGFPGSRGAQGSNGEAGLP
GPLGPKGPQGQTGWPGLSGDTGPNGPNGLPGRGGERGFDGRPGFPGPAGLSGEKGDRGSD
GLPGDTAFIPIKGQPGFPGLPGGPGFTGPRGNKGLPGPQGPLGYPGRDGLVGPGGPQGRR
GKDGAPGVPGLQGPRGLPGNSGERGRDGDPGDPGGEGCVGQPGRKGESGQKGDEGDSISY
PGPPGNKGSVGDRAPPGPQGDSGEVGDPGCHGRNADKGDAGPTGSTGVPGFPGISGPPGI
TGRPGRDGPMGESGLPGPNGRPGLKGLQGPPGPLGLHGLDGLKGVKGEVGARGPGLEGPP
GHKGDTGDKGQRGNPGPSGPRLPGPKGPKGQAGVTGPPGPCGKAGPKGEECKDVRYGQLG
EPGGPGSDGSEGAQGDIGDPGPVMAMPGEDGIPGNQGYPGIPGQRGDAGPPGVPGIAGYP
ARKGEQGATGFMGMPGPSGGGGDPGIDGAKGQKGASGEPGQKGEQGVIRIGPPSQPPPGP
PGPPGLPGPSGDRGPAGPNGREGARGIKGYTGDPGFPGTPGAPGLNGPTGNLGDPGDNGM
RGLQGLTGDTGDQGDCGPSTRYNSGFLLVKHSQSESLPVCPDGMAQLWSGYSLLYLEGQE
KAHTQDLGQAGSCMRIFSTMPFSYCNMASCNHASRNDKSYWLSTNTPVPPMPVEGVQISS
LISRCVVCEAHSPPVAIHSQDTNPPACPYNWRPLWDGYSFLMHTGAGDEGGGQSLTSSGS
CLQDFRAQPFVECQGPRGSCHYFSNIYSYWLTRVSGADFGQGPGQAILKDPREHQQVTSR
CRVCIKE
NT seq 2904 nt   +upstreamnt  +downstreamnt
atgacacccccaggtcctccaggatttagtggagatccaggcagatggggtccagagggc
cccagcattgacggccccccaggccagcctggcagcattggctcccaaggactcaaagga
cctaacggggcctccatccctgggcccccagggcagatggggcctgaaggaaatccaggc
ttttctggagccacaggcacacgtggactcctggggccttcgggcccaacaggcttgcct
ggaagggatggagtaccaggagagaaaggggaaactggggcccagggctgctctggcaga
gtcgggcctaaaggggagactcctccatgtgatgacggtccacctgggccaccgggctcg
ccagggtgcaagggcttcgatgggcctcaaggcttgaaaggggatataggtttgaaaggg
gagccaggtctcccaggcagaggacctccagggcctccaggaaagccaggaaacccagga
acaccaggcttcccgggctcccggggggcacaaggttcaaatggagaagcgggactacca
ggacctcttggcccgaaaggtccacaaggacaaactggctggccaggattgtccggggac
actggaccaaacggcccaaatggacttccgggaagagggggagagaggggctttgatgga
cggccagggttcccaggacccgctggattgtcaggagagaaaggtgacagaggctcagac
ggtcttcctggagacaccgctttcatcccaatcaaaggccagccggggttccctggactt
cctggtggtcccggattcacgggaccccgaggtaataaaggcttacccggcccacagggt
cccttgggctatcccggccgagatggacttgttggccctggtggcccccagggacgtaga
ggaaaggatggagcaccaggggtaccaggcttacaagggccacgtgggttgcctggcaac
agtggagaacgtggcagagatggagatccgggagatccaggaggtgagggctgtgtagga
caaccaggccgcaaaggagaaagcggacaaaaaggtgatgagggtgattccatcagttat
ccaggacccccagggaacaaaggttcagtaggtgacagggcaccaccaggaccccagggt
gactcaggggaggtgggtgatccaggttgccatggcagaaatgcagacaaaggggacgca
ggacccactggatccacaggtgtaccaggatttccaggtatatcaggcccccctggcata
actggtaggcctggcagagatggccctatgggtgaatctggcctccctggacccaatggc
agacctggactgaaaggactccaaggtcccccggggccattggggctgcatggcctggac
ggtctgaaaggggttaagggtgaggtgggagcacgagggcctgggctcgagggccccccg
ggtcataagggggacacaggggataagggccaaagaggaaacccaggcccctcggggccc
cggttaccgggtcctaaaggccccaaaggacaggcaggagtcacaggacccccagggcct
tgtggaaaggctggtccaaaaggtgaagagtgtaaggatgttagatatggacagcttgga
gagcctggtggcccaggatcagatggatcagaaggggcacaaggggacataggggatcca
gggccagtgatggccatgccaggggaggacgggataccaggaaaccaaggctaccccggg
ataccgggacagcgaggagatgctggacctccaggggtaccgggcatagcgggctatcca
gcacgaaaaggtgaacaaggagcaacaggcttcatgggtatgcccggacccagtggtggt
gggggggacccgggcatagacggagccaaaggccagaaaggggccagcggagagccaggt
caaaagggagagcagggggtcattaggattggccccccttcacaacctccccccggccca
ccagggcctcctggtcttcccgggccctcaggggaccgggggcctgccggcccgaatggc
agagagggtgccagaggcattaagggttacacgggagatccaggatttccaggaacccca
ggagcaccagggctaaatgggcctacaggaaacctgggagatcctggagacaacggaatg
agaggactacagggtctcacaggagacaccggtgatcaaggagattgcggacccagcacc
cgctacaactctggctttctattggtcaagcacagccaatcagaatccctccctgtgtgc
ccagatggaatggcccagctgtggagtggatacagcctcctgtatctggagggacaagag
aaagcccacacacaggacctgggccaggctggctcctgcatgcgtatcttcagcaccatg
cccttctcctactgcaacatggcctcctgcaatcacgccagccgcaacgacaagtcctac
tggctctccaccaacacgcccgtgcccccgatgcccgtggagggcgtgcagatcagctcg
ctgatcagccgctgtgtggtgtgcgaggcccactccccgcctgtcgccatccacagccag
gacaccaacccacccgcgtgcccctacaactggaggcctctgtgggacggctactccttc
ctgatgcacacgggcgcaggagacgagggcggtggccagtcgctgacatcctcgggcagc
tgcctgcaggacttccgggcgcagccattcgtggagtgccagggcccgcgcggctcctgc
cactacttctccaacatctacagctactggctgacccgcgtgagcggcgccgacttcggc
caaggccccggccaggccatactgaaggacccgagagagcaccagcaagtgaccagccgc
tgccgggtctgcattaaggagtaa

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