Clupea harengus (Atlantic herring): 105909275
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Entry
105909275 CDS
T09045
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04382
Cornified envelope formation
char04510
Focal adhesion
char04512
ECM-receptor interaction
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105909275
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105909275
09142 Cell motility
04820 Cytoskeleton in muscle cells
105909275
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105909275
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
105909275
00536 Glycosaminoglycan binding proteins [BR:
char00536
]
105909275
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105909275
Glycosaminoglycan binding proteins [BR:
char00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105909275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105909275
NCBI-ProteinID:
XP_042564725
UniProt:
A0A8M1KQ34
LinkDB
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Position
9:complement(4382917..4398263)
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AA seq
967 aa
AA seq
DB search
MTPPGPPGFSGDPGRWGPEGPSIDGPPGQPGSIGSQGLKGPNGASIPGPPGQMGPEGNPG
FSGATGTRGLLGPSGPTGLPGRDGVPGEKGETGAQGCSGRVGPKGETPPCDDGPPGPPGS
PGCKGFDGPQGLKGDIGLKGEPGLPGRGPPGPPGKPGNPGTPGFPGSRGAQGSNGEAGLP
GPLGPKGPQGQTGWPGLSGDTGPNGPNGLPGRGGERGFDGRPGFPGPAGLSGEKGDRGSD
GLPGDTAFIPIKGQPGFPGLPGGPGFTGPRGNKGLPGPQGPLGYPGRDGLVGPGGPQGRR
GKDGAPGVPGLQGPRGLPGNSGERGRDGDPGDPGGEGCVGQPGRKGESGQKGDEGDSISY
PGPPGNKGSVGDRAPPGPQGDSGEVGDPGCHGRNADKGDAGPTGSTGVPGFPGISGPPGI
TGRPGRDGPMGESGLPGPNGRPGLKGLQGPPGPLGLHGLDGLKGVKGEVGARGPGLEGPP
GHKGDTGDKGQRGNPGPSGPRLPGPKGPKGQAGVTGPPGPCGKAGPKGEECKDVRYGQLG
EPGGPGSDGSEGAQGDIGDPGPVMAMPGEDGIPGNQGYPGIPGQRGDAGPPGVPGIAGYP
ARKGEQGATGFMGMPGPSGGGGDPGIDGAKGQKGASGEPGQKGEQGVIRIGPPSQPPPGP
PGPPGLPGPSGDRGPAGPNGREGARGIKGYTGDPGFPGTPGAPGLNGPTGNLGDPGDNGM
RGLQGLTGDTGDQGDCGPSTRYNSGFLLVKHSQSESLPVCPDGMAQLWSGYSLLYLEGQE
KAHTQDLGQAGSCMRIFSTMPFSYCNMASCNHASRNDKSYWLSTNTPVPPMPVEGVQISS
LISRCVVCEAHSPPVAIHSQDTNPPACPYNWRPLWDGYSFLMHTGAGDEGGGQSLTSSGS
CLQDFRAQPFVECQGPRGSCHYFSNIYSYWLTRVSGADFGQGPGQAILKDPREHQQVTSR
CRVCIKE
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgacacccccaggtcctccaggatttagtggagatccaggcagatggggtccagagggc
cccagcattgacggccccccaggccagcctggcagcattggctcccaaggactcaaagga
cctaacggggcctccatccctgggcccccagggcagatggggcctgaaggaaatccaggc
ttttctggagccacaggcacacgtggactcctggggccttcgggcccaacaggcttgcct
ggaagggatggagtaccaggagagaaaggggaaactggggcccagggctgctctggcaga
gtcgggcctaaaggggagactcctccatgtgatgacggtccacctgggccaccgggctcg
ccagggtgcaagggcttcgatgggcctcaaggcttgaaaggggatataggtttgaaaggg
gagccaggtctcccaggcagaggacctccagggcctccaggaaagccaggaaacccagga
acaccaggcttcccgggctcccggggggcacaaggttcaaatggagaagcgggactacca
ggacctcttggcccgaaaggtccacaaggacaaactggctggccaggattgtccggggac
actggaccaaacggcccaaatggacttccgggaagagggggagagaggggctttgatgga
cggccagggttcccaggacccgctggattgtcaggagagaaaggtgacagaggctcagac
ggtcttcctggagacaccgctttcatcccaatcaaaggccagccggggttccctggactt
cctggtggtcccggattcacgggaccccgaggtaataaaggcttacccggcccacagggt
cccttgggctatcccggccgagatggacttgttggccctggtggcccccagggacgtaga
ggaaaggatggagcaccaggggtaccaggcttacaagggccacgtgggttgcctggcaac
agtggagaacgtggcagagatggagatccgggagatccaggaggtgagggctgtgtagga
caaccaggccgcaaaggagaaagcggacaaaaaggtgatgagggtgattccatcagttat
ccaggacccccagggaacaaaggttcagtaggtgacagggcaccaccaggaccccagggt
gactcaggggaggtgggtgatccaggttgccatggcagaaatgcagacaaaggggacgca
ggacccactggatccacaggtgtaccaggatttccaggtatatcaggcccccctggcata
actggtaggcctggcagagatggccctatgggtgaatctggcctccctggacccaatggc
agacctggactgaaaggactccaaggtcccccggggccattggggctgcatggcctggac
ggtctgaaaggggttaagggtgaggtgggagcacgagggcctgggctcgagggccccccg
ggtcataagggggacacaggggataagggccaaagaggaaacccaggcccctcggggccc
cggttaccgggtcctaaaggccccaaaggacaggcaggagtcacaggacccccagggcct
tgtggaaaggctggtccaaaaggtgaagagtgtaaggatgttagatatggacagcttgga
gagcctggtggcccaggatcagatggatcagaaggggcacaaggggacataggggatcca
gggccagtgatggccatgccaggggaggacgggataccaggaaaccaaggctaccccggg
ataccgggacagcgaggagatgctggacctccaggggtaccgggcatagcgggctatcca
gcacgaaaaggtgaacaaggagcaacaggcttcatgggtatgcccggacccagtggtggt
gggggggacccgggcatagacggagccaaaggccagaaaggggccagcggagagccaggt
caaaagggagagcagggggtcattaggattggccccccttcacaacctccccccggccca
ccagggcctcctggtcttcccgggccctcaggggaccgggggcctgccggcccgaatggc
agagagggtgccagaggcattaagggttacacgggagatccaggatttccaggaacccca
ggagcaccagggctaaatgggcctacaggaaacctgggagatcctggagacaacggaatg
agaggactacagggtctcacaggagacaccggtgatcaaggagattgcggacccagcacc
cgctacaactctggctttctattggtcaagcacagccaatcagaatccctccctgtgtgc
ccagatggaatggcccagctgtggagtggatacagcctcctgtatctggagggacaagag
aaagcccacacacaggacctgggccaggctggctcctgcatgcgtatcttcagcaccatg
cccttctcctactgcaacatggcctcctgcaatcacgccagccgcaacgacaagtcctac
tggctctccaccaacacgcccgtgcccccgatgcccgtggagggcgtgcagatcagctcg
ctgatcagccgctgtgtggtgtgcgaggcccactccccgcctgtcgccatccacagccag
gacaccaacccacccgcgtgcccctacaactggaggcctctgtgggacggctactccttc
ctgatgcacacgggcgcaggagacgagggcggtggccagtcgctgacatcctcgggcagc
tgcctgcaggacttccgggcgcagccattcgtggagtgccagggcccgcgcggctcctgc
cactacttctccaacatctacagctactggctgacccgcgtgagcggcgccgacttcggc
caaggccccggccaggccatactgaaggacccgagagagcaccagcaagtgaccagccgc
tgccgggtctgcattaaggagtaa
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