Clupea harengus (Atlantic herring): 105909307
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Entry
105909307 CDS
T09045
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X3
KO
K17890
autophagy-related protein 16-1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04136
Autophagy - other
char04140
Autophagy - animal
char04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105909307 (atg16l1)
04136 Autophagy - other
105909307 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
105909307 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105909307 (atg16l1)
03029 Mitochondrial biogenesis [BR:
char03029
]
105909307 (atg16l1)
Membrane trafficking [BR:
char04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
105909307 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
105909307 (atg16l1)
Mitochondrial biogenesis [BR:
char03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
105909307 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
EIF3I
WDR55
WD40_Gbeta
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_NWD2_C
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_VPS8
eIF2A
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_ACSF4
Tricorn_2nd
Beta-prop_DCAF12
Beta-prop_SPT8
CCDC93_CC
NET2A
DUF4200
nos_propeller
HEF_HK
Lipoprotein_6
CC_Bre1
HAUS-augmin3
STX6_10_61_N
Motif
Other DBs
NCBI-GeneID:
105909307
NCBI-ProteinID:
XP_012693380
Ensembl:
ENSCHAG00000023463
UniProt:
A0A6P3WA17
LinkDB
All DBs
Position
9:4167378..4183091
Genome browser
AA seq
607 aa
AA seq
DB search
MAGRREECLWKKHIAEQLKLRDRVQRQAFEEIIHQYNRLLEKSDLQAVLSERLQPDKYDH
QNRHDLSPGSDASRNDALHQEMAQMRIKHQEELTELHKKRGELASSVIELNNQIQLKDKE
IQSNEAKMLEYQQQISELEGECRELRSQLQDLERANQTLKDEYDALQITFSALEEKLRRT
LEDNQELVSRWMAEKAQEANRLNAENEKDCRRRQAKLQKELADAAKEPLPIDPDDDIEVL
SEDAGGKGPGEASPNRPLSRTPSKRISQPPPGGIMDSITNIFGRRRSVNSFGTSPENTET
ASGGSVDVRVPSTALHIFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVVSGRCEPKG
ALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLAARFLLDN
ARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHFDKKVRFWDIRAES
IVCELELQGKVTSLDLNHDRTELLTCSRDDLVKIIDLRNNAVRQTFSAQGFKCGSDWTRV
TFSPDGSYIAGGSAEGTLYVWNVLTGKLDRTLDKGHSSAVNSVSWSPSGTYVVSVEKGSK
AVLWSDM
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtcggcgggaggagtgcttgtggaagaagcacatcgcggagcagctcaagctg
cgggaccgcgtccagaggcaggccttcgaggagatcatccaccagtataatcgtcttctt
gagaagtctgacctacaagccgtgctctctgagcgactgcagccagataaatatgaccat
cagaatcgacacgacctcagtccggggtcggacgccagtcgcaatgacgccctgcatcag
gaaatggcccagatgcgcatcaagcaccaggaggagctcactgaactgcacaaaaagcgt
ggagagcttgcctcgagtgtgattgaactgaacaaccagattcagttgaaggacaaagag
atccagagcaacgaggccaagatgctggagtatcagcagcagatctctgagctggagggc
gagtgtcgcgagctgcggagtcagctgcaggacctggagcgggccaatcagacgctgaag
gacgagtacgacgccctgcagatcaccttcagcgcgctggaggagaagctgcggcgcacc
ctcgaggacaaccaggagctggtctcgcgctggatggccgagaaggcccaggaggccaac
cgcctcaacgccgagaatgagaaggactgcaggcgcaggcaggccaagctgcagaaggag
ctggcggacgctgccaaggagcccttgcctatcgacccggatgatgacatagaggtcctg
tctgaggatgctggtgggaaggggccaggtgaggcctcccctaaccgacccctcagccgc
acgcccagtaaacgcatatcccagcctccccctggtggtattatggactccatcaccaac
atatttggcaggcgtcgctcggtgaactcgttcgggacgtccccggagaacacggagacg
gccagcggagggtctgtggacgtccgggtgccctccaccgccctccacatatttgacgcc
catgatggggaggtgaacgctgtgcagttcagtccaggctcccgcttgctggccactgga
ggaatggaccgcagggtcaaactctgggaggtcgtctcaggtcgatgtgagccgaaagga
gctctgacaggcagcaatgctggcatcaccagcatcgagttcgacagcgctggttcctat
ctgctggccgcctccaatgactttgccagtcggatctggactgtagatgactacaggctg
aggcatacactcacaggccacagtgggaaagtgcttgcagcgcgtttcctgctggacaac
gctcgcatcgtctccgggagctacgaccgcaccctcaaactctgggacctgcgcagcaaa
gtctgcatgaaaaccgtgtttgcgggctccagctgtaatgacatcgtctgcactgagcag
tgtgtcatgagtggccattttgataagaaggtccgcttctgggacatcagggcggagagt
atagtgtgtgagctggagctgcagggcaaggtcacgtcgcttgacctgaaccacgaccgg
accgagctgctcacctgctctcgtgacgacctggtgaagatcatcgatctgcgaaacaac
gccgttcgacagaccttcagtgctcagggctttaagtgtggttcagactggaccagagtg
acctttagtccggatggaagctacatcgcaggcggttctgctgaaggaaccctgtatgtg
tggaacgtcctcacaggaaagcttgaccggactctggacaaaggccacagctctgcggtc
aactctgtgtcctggtccccttctggcacttacgtggtgagcgtggagaagggcagcaag
gccgtgctctggtccgacatgtga
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