Clupea harengus (Atlantic herring): 105909329
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Entry
105909329 CDS
T09045
Symbol
scaf4b
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105909329 (scaf4b)
03041 Spliceosome [BR:
char03041
]
105909329 (scaf4b)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105909329 (scaf4b)
Spliceosome [BR:
char03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
105909329 (scaf4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
105909329
NCBI-ProteinID:
XP_012693403
UniProt:
A0A6P3WB01
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Position
9:complement(2128524..2151270)
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AA seq
850 aa
AA seq
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MDAVNAFNMELFSMIDMKPPISRAKMMSITKSAIKAIKLYKHVVQIVEKFVKKCKPELKI
PGLYVVDSIVRQSRHQFGMDKDVFGPRFLKNFTATFQNLYMCPTDDKCKILRVLNLWQKN
GVFSMDIIQPLLDMAAATMMPIVENGLPAAASPPPAVPAEISLPVTSASIVQALPQLQNS
GALAAVAQLFQSSQGQELQQILQNLQQPRVSVIEGSSGVAAAGPPMASSQPVPHSLPHTE
QKNSFAKKLLDRFDYDDEPEAAEDVKDDLAPNMQPNMQQQMMYAQFPAQMPNQPCPGQMQ
AMGQPLINQQMGAMSYMPQVEASAPTASHQPQVAVMEGDPSGRRDRKDDARGRRSRSRSP
RRHSPSRSRKSRSGSRSRRSRFHRSRSRSRDRRSRDWRSPRSRSEERRERERERERRQKG
LPPLKSKTLSVCSTTLWVGQLDKKTSQQDISSLLEEFGQIESINMIPPRGCAYIVMVHRQ
DAYRALTSLSRGTVKVNQKPIKIAWALNKGIKTDVKQLWDVERGVTYIPWSKVKVEVLET
YREGGMLDAETLCPDWDGSVKDLVKPGAGSGGQEGRRSEDHSMSTVQVPPTVPVVSAGNP
SFHPPMGLPPPAMMPGGPPPPFLPPGFDPGQIPPGFPLPGAMPATGPLPAGPPMNMPPMS
GPGNSVEEPLKDKMVPENTPSDALGIHESMSPPPTVGLLGARPGMMPLQRPPGPPPFMPH
FPHDMPPPNMPPMHPPMMPRGPNPMMYREPPPGRFRMPMPHPPRDDFHPPPEDFPPQMDD
FPPPHGPHMGPEDMDDWEGPPPPFANDWHREPGWYRDQPPHRGRGRRGWGRDRPGPGGPG
RFMNRHEGFD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagtcaacgcttttaacatggagttattctccatgatagacatgaagccccct
atatctcgggcaaaaatgatgtctataactaagtccgccataaaggccattaagttatac
aagcatgttgttcagattgttgagaaattcgtcaagaagtgcaaacctgagttgaagatc
ccaggcctttacgtagtggattccatcgtacggcagtctcgtcatcagttcggtatggac
aaggatgtgtttgggcctaggttcttgaagaacttcaccgcaacctttcagaacctttat
atgtgtccaactgatgacaagtgtaagatactgcgtgtgttgaacctgtggcaaaagaat
ggggttttcagtatggacatcattcagcctctgttggacatggccgcagctactatgatg
cctatagtggaaaatggccttccagctgcagcctccccacccccagctgtgccggcggag
atctcgctgccggtcaccagtgcctccatcgtgcaggcgctgccccagctccagaactcc
ggggcccttgcagccgtggctcagctcttccagtcctcacagggtcaagagttgcagcaa
attctccagaatcttcagcaaccccgggtttctgtgattgagggctcatctggagtagca
gcagctggacccccaatggcttcatcccagcccgtccctcacagtcttccccatacagag
cagaagaactcctttgctaagaaacttcttgaccgttttgactatgatgatgaaccagag
gctgctgaggatgtgaaggacgacttggctccaaatatgcaaccaaatatgcagcaacag
atgatgtacgctcagtttcctgcccagatgcccaaccagccttgcccagggcagatgcag
gcgatgggccagcccctcataaaccagcagatgggtgccatgtcctacatgccccaggtg
gaggccagcgcccctactgcctctcatcagcctcaggtggctgtgatggagggcgatcca
tcagggaggcgagacagaaaggatgacgcacgaggcaggagatcacgatccagatcgccc
agaaggcattcgccctcacgctcccgcaagtcacgctccggctctcgctcccgccgctca
cggttccatcgctcacgctcccgctcaagggaccggcgctcccgagactggcgctcgccc
cgttcccgatcagaggagagaagggagagagagagggaacgggagcggaggcagaaggga
ctgccccctttaaagagcaaaacacttagtgtgtgcagcactacactgtgggttggccag
ctggacaagaaaacttcacaacaagacatatcatcactactggaggagtttggtcagatt
gagtccataaatatgatcccccccagaggctgtgcctacatcgtcatggtgcacaggcag
gatgcctacagggccctcaccagtctcagcagggggacggtcaaggtcaaccagaagccc
atcaagattgcttgggcgttgaacaagggcataaagaccgatgtgaagcagttgtgggat
gtggagcgcggggtcacatacatcccctggagcaaggtcaaagtggaggtcctggagacc
tatcgggaaggaggcatgctggacgctgagactctttgtccagactgggacggctctgtc
aaggacctggtgaagcctggagcaggaagtggaggtcaggaaggacgccggtcagaggac
cactcaatgtctacggtacaggtgccgcctaccgtccccgtggtctcagcagggaatcct
tctttccaccctcccatgggccttccacctccagccatgatgccagggggtccacctcct
cccttcttacctccaggctttgaccctggccagattcccccaggatttcctctgcctggt
gctatgcctgctactggacctctgccagctggccctcccatgaacatgccaccaatgtcc
ggaccaggaaactctgtggaggagccgctgaaagacaagatggttccggagaatactccg
tccgatgctctaggaatccacgagtccatgagtcccccaccaacagtaggcctcctcggg
gccaggcccggcatgatgcccctgcagcgtcctccaggaccacccccgttcatgccccat
ttcccccatgatatgccacccccgaacatgcctcccatgcatcctccgatgatgccccgg
ggcccgaaccccatgatgtaccgggagcctccacctgggcggttccgaatgccaatgccc
catcccccaagagacgacttccacccgcccccagaagatttccccccgcagatggacgac
ttcccgcctcctcacgggccgcacatgggtcccgaggacatggatgactgggagggtcca
ccaccgccgttcgccaacgattggcacagggagccaggctggtacagggaccagcccccc
cacagggggaggggcaggcgtggttggggacgggacagaccaggacccggaggtccaggc
cgcttcatgaatcgccatgaagggttcgactag
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