Clupea harengus (Atlantic herring): 105909480
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Entry
105909480 CDS
T09045
Symbol
cdhr1a
Name
(RefSeq) cadherin-related family member 1 isoform X1
KO
K16501
cadherin-related family member 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
char04515
]
105909480 (cdhr1a)
Cell adhesion molecules [BR:
char04515
]
Cadherins
Cadherin related
105909480 (cdhr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
RibLong
Insulin_TMD
DUF2121
Motif
Other DBs
NCBI-GeneID:
105909480
NCBI-ProteinID:
XP_031434504
Ensembl:
ENSCHAG00000003098
UniProt:
A0A6P8G5A0
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Position
13:15552099..15570409
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AA seq
875 aa
AA seq
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MTNFNNIVPSLLVVFAQFTFAATHLDYAPYFFDNGPNSNSGNLALFSLSEDTPVGTQIYI
LNGTDPEGQPVTYGLTFEPGSKELFRVDPKSGTVTLIEELDREVQDEIEVFVSITDGRNK
VTEKVQVFVMDVNDEKPQFQNLPAILDVRESTRPGSSVYKVEAIDKDTGSGGSLTYYLQS
SDANGKFGIDRHSGVLRIKQGETLDFEKSTTHFVTVVAKDGGGNYKGKYQVLSSSSTLTI
NVVDTQDTPPIFVGSPYFGYVYEVSSPGSEIFTVFAKDGDFGNPNPIHYSIDSGADAVFS
INKTSGCISLRAYPAHLRKEMFHIKVKASEVGPDGELMDYAITTVTIRVVDLNNHPPTFY
GENGPQNMFELTMYEHPPEGEILRGLKISVNDSDQGANAKFNLRLVGPGRILRVVPQTVL
NEAQVTILVEDSSAIDYEKSQFLTFKLLAVEIDTPERFSATADIVIHLLDTNDNAPQFSS
EYYIARIPENSPGGSNVVTVTAEDPDSGLWGEVKYSIYGAGSDLFLIQSQSGIIYTQPWA
SLDAEVKSKYNFYVKAEDREGKYSLAEVFVTILDLNDHPPEFNNNFLETTMIIGAPVKIE
AIDEDAEEPNNIIEYSIMKTEPDNIFDINADTGEIVLKSYIKSMDIVQNITNQKECTWSV
VIQARDRGSPSFVTTTVVKIDITEATQLNGPFASFLMQSRDNPIQILGMIACVICSMLVA
TVLISTITFVRNKKSNKILPSRRIIRRRPKHRQWGFKVGGNSGKNFEVKDEPENVENINC
NNNVHTHCHLHHHPPPPMYPPPMHPPHMHPPGLPPPLPCFSRPSERQWAGTPVSSSTVVL
KPMKRLIQTKENNVNTALVSELKMRLEQKRMASQY
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatttcaataacattgttccttctcttctcgttgtatttgcccagttcaccttt
gcagcaacacatcttgattatgctccatatttctttgataatgggcccaacagtaacagt
ggtaatctggcactgtttagtctctcagaagacacgccagttggaacacagatatatatt
ctcaatggaactgacccagaaggtcaaccagttacatatggactgacctttgaaccagga
tccaaggaattgtttcgagttgatcccaaatctggaacagttacccttattgaggagctt
gacagagaggtgcaagatgagattgaagtatttgtcagtattacagatgggcgtaataaa
gttactgagaaggtccaagtgtttgtgatggatgtcaatgatgagaaaccacagttccag
aatctgcctgcaattttggatgttcgagagagtaccagacctggcagcagtgtctacaaa
gtagaggctatagataaggacacgggctcgggtggatccctcacctactacctccagagc
tctgacgcaaatgggaagtttggaatagaccgacacagtggagtgctacgcattaaacag
ggggagaccctggactttgagaagtccacaacacattttgtcaccgtggtagcaaaggat
ggagggggaaactataagggaaagtaccaggtcctctcatcgtcttctactctgaccatc
aatgttgttgacactcaggacacaccccctatctttgtcggatctccgtattttggatat
gtttatgaagtgtcatcaccaggctctgaaatattcacagtttttgccaaagatggagac
tttgggaaccccaatcctatccattactctattgattctggtgcagatgcggtcttcagc
atcaataaaacaagtggctgcattagcctgcgtgcctaccctgcccacctgaggaaagaa
atgtttcatattaaagtcaaggcctcagaggtgggtccagatggagagttaatggactat
gccatcaccacggtaaccatacgagtagtggacctgaacaaccaccctcccaccttttat
ggagaaaatggacctcagaacatgtttgagcttacaatgtatgagcaccccccagaggga
gaaatcttgagggggctgaagatctccgtcaatgactcagatcagggagctaatgcaaag
tttaacctaaggctggtcgggcctggacggatattacgtgtggtccctcagaccgtcctc
aacgaggcccaagtcaccatcttagtggaggactcctctgccatagactacgagaaatca
cagtttctcacatttaagctgcttgcagtggagattgacacacctgagagattcagtgcc
acagcggatatagtgattcacctactagacactaacgacaacgccccccagttctcatca
gagtactatatcgctcggatccctgaaaactcccctggaggatccaatgttgttacagta
acagctgaagatccagattcaggcctatggggggaagtgaagtattctatatatggtgct
ggatcagacttgttcctcattcaatcgcagtcaggaatcatttatactcaaccttgggct
agcctggatgctgaagtcaagtccaagtacaatttctatgtaaaagctgaggacagagaa
ggaaagtacagcttggctgaggtctttgtaaccattcttgacctcaatgaccacccacct
gaattcaacaacaattttttggagacaaccatgatcattggggcaccagtcaaaatagag
gcaattgatgaggatgcggaggagcccaataacatcattgagtactccatcatgaaaact
gagccggacaacatctttgacattaatgctgacacaggcgagatcgtgctgaagtcttac
atcaagtccatggacatcgttcagaacatcaccaatcagaaagaatgtacgtggtctgtg
gtgatccaggccagagaccgggggtccccatccttcgtcaccactactgtggtcaagatt
gacatcactgaagcaactcaactcaatggaccattcgcgtcctttttaatgcaaagtaga
gacaatcccattcaaatcctaggtatgattgcctgtgtcatctgtagcatgctcgtggct
acagtcttgatctctactatcacatttgtgcgcaacaaaaagtcaaacaagatcttgcct
tcacgccgcattatacggagaaggcccaagcacagacagtggggattcaaagttggagga
aacagcggaaagaattttgaagtcaaagacgagcctgaaaatgtagagaacattaactgt
aacaataacgtccacacacactgccacctccaccaccacccaccccctcctatgtacccc
cctcctatgcacccccctcatatgcaccccccaggcctgccccctccactcccatgcttc
tcccggccaagcgagcggcagtgggctggtaccccagtcagctccagtacagtggtttta
aagcccatgaaaagattgattcagactaaagaaaataatgtgaacacagcactggtctca
gagctgaagatgagacttgaacagaaaagaatggccagccaatattga
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