Clupea harengus (Atlantic herring): 105909628
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Entry
105909628 CDS
T09045
Symbol
ncor1
Name
(RefSeq) nuclear receptor corepressor 1 isoform X6
KO
K04650
nuclear receptor co-repressor 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
105909628 (ncor1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
char01009
]
105909628 (ncor1)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
char03036
]
105909628 (ncor1)
Protein phosphatases and associated proteins [BR:
char01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
105909628 (ncor1)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
SMART complex
105909628 (ncor1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GPS2_interact
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
105909628
NCBI-ProteinID:
XP_012693721
Ensembl:
ENSCHAG00000014718
UniProt:
A0A6P3WBE2
LinkDB
All DBs
Position
8:24582929..24646624
Genome browser
AA seq
2478 aa
AA seq
DB search
MSSSGYPPTQGAFSSEQNRYPPHSVQYTFSTARHQPEFTVPDYRGHIQDQQGRRRPSLLS
EFHPGTERPPERRHGYEQQFITSVSTQAEHESLDAKRPRVDGAPETHFSRALPGSLVLPH
VMQDGLMSASGEVKKDTQFSVKVEASSSGLLQHMDQNASPSKLSKEELIQSMDRVDREIA
KVEQQIFKLKKKQQQLEVEAAKPVEPEKPVTPPPVERKHRSIVQIIYDENRKKAEEAHKI
FEGLGPILELPLYNQPSDTKVYHDNIKTNQLMRKKLILFFKRRNHARKQREQNICQRYDQ
LMEAWEKKVERMENNPRRKAKDGRTREYYERQFPEIRKQREQQERFQRVGQRGTGLSATI
ARSEHEISEIIDGLSEQENNEKQMRQLSVIPPMMYDTEQRRVKFINMNGLMEDPMKVYKS
RQFMNVWTEHEKEIFRDKFVQHPKNFGLIASYLERKCVADSVHYYYLTKKNQNYKTLVRR
NYRRRGRNQQITRPSQEEKSDDKNEEEKAERSEKREDEEKKEEEEKEEKEEIKDLGRDKD
KCDGGEDEDGKEQNTPRGRKTANSQGRRKGRITTRSMANEAASVGAEDAPLPLPEPSLPE
PVQQPKPEPVPKTVREPSKTAPLTMDRGGVESGETSRWTEEEMEIAKKGLVEHGRNWSAI
AKMVGTKSEAQCKNFYFNYKRRHNLEDLLQQHKQETRRSRGDRDVSQSESMASTVSAGDD
DEDEDNPEDSEGPDNSSDTESAPSPSQTDPSKAGGMASQRDEDSAGMAAVAAASEQDTAS
DGKGQDAPMEELRVKLEKSPEEAGGDAGSQEERGRGGYEAQVHTKTEPLDMEMSVGAGDV
QVKVEPEAKERMEKHGEPGGQRDQQHSDNDSSATCSADEDVETEPRMYEKPSMLNPAGSV
LVSSAKLAPMNMHQLQLRAATIPSMVSSHSNNPHCSIRYAERLGGGLRGQSMSYVDHHPH
QMWGYGSDPQVPVAYGPGGVMSGYTMFQHQIKAVHESAHQEEKQRQDQRQDQRQDQRQDQ
RQDQRQDQADLERRPGSGSGKPFSYMPYEVKLSMEQDAHGGVVRPGTPYRLSPREPSRAS
PQPDSARYSVPPVLHPSPNQMVQNLTDGVRMAFPRHRPPNIPSPPPLIPTSKPTDKPAFI
HGGSISQGTPVTYLPSHSHAVYGPEATKSSVGSISLGLPRQQDPTKPVSYIKQEECSPRG
QSSQAEGLHSRAQYEGVVRGGPMSAIQDVGMVRGSSAKPQEGSPFRGGSITQGTPALPQS
SIAADLLKTTITKLPTEDLSNPDKSRAEAMAKGHVIYEGKHSHIYSYDAIKNPREGTRSP
RTGHELKRNYEMMEGSRGHPAREAVPYEGLISRARDGSHPDSKDRTVVTGSIMQGTPRAS
VEAYEEGMKYGKQIKTESPPIRSFEGGITKGKPYEGGVNTIKEMGRSVHEIPRQDLQGQE
RERKTPGLDGSIGQQSAIKHNVKSLLTSPGKLPHSAMPQLEAMERAKYEESKASDRVRHT
SVVNSTSVLRSTHQDSGRSQVSPVMYEDANARRTPVNYSSSSSSSMRASPLLVRGPEGNI
SAGKPVSQERKSALVNAQAGRESVPARSPVPSADPMASHFDPHHRPVIPGEVYRPPHLPH
HMDPNLVFHPAYIFPRQPSPTGYPNTYQLYTMENTRQTILNDYITSQQMQVIPRADVARV
LSPREHQIPIPYHPGPRGIIDLAQMPRAPILLSDRLTYLSGAHPPFSPSAYNQASMLAAA
SVERERERDREQREREKERDKEREREQRERERAAAAAANEYMRGGPERPGRPGSNSYMRS
PSPSVRAPEGANQQRASIFQATNSKNNTPLMPMSSPAAASQGRYNTAADALAALVDAAAS
APQMDVAKAKESKHEAPRDEDMSSSSSSARRSAAAFSEQQEAERRSMQSPYSSMGMPGVK
GHSGYPEGAAAMGRDKNAPTKSRIEEELRTRGKTTITAANFIDVIITRQIASDKDSRERS
SQSSDSSSSLSSSRYDAQAGGAIEVISPASSPAQSQEKPESSFPQEKASQPPTGSVRAFD
MSRYRQQVERDPGPPAPQHPPTPQTHRVMTLADHISHIITRDFARNQEPSPVPTSMPSSS
SSSSSASATFQSSAPHVSGSGSGRAKVPSNYSPENPVLSSHHQRTPSRVSPENAPEKPRS
RPGKSPERGGRPQENYEPISPPQSYSAMDKPEPSAGVLQSQRREADMPEQRTDTRSPGSS
SYLPAFFTKLENTSPMVKSKKQEIFRKKGVGDSDVVPAQPGTEIFNLPAVTSSSTVNPRN
HSFSDPASNLGLEDIIRKALMGNMEDRPEESAQAGAPHTGSTNNPTSIATVSEGRQEANP
SPSTGKQKPQGKPNSRKAKSPNPGQVFPGERPSSVSSVHSEGDYHWQAPTWAWEERPSST
GSMQFPYNPLTMRMLSSTPPTSMACPSPSLQSQQPPPPGPPPQSAVSGGAGPVAPPSRVW
EREPLLQEQYETLSDSDD
NT seq
7437 nt
NT seq
+upstream
nt +downstream
nt
atgtccagctcaggctacccccccactcagggggccttcagcagtgaacagaaccgttac
cctccacactctgtccagtacaccttcagcacagcacgtcatcagccggaattcaccgtc
ccagactaccggggacacattcaggaccagcaaggtcgacgcagaccctctctgctctcg
gaattccaccccgggactgagaggcccccagagaggaggcatggctatgagcagcagttc
atcacgtccgtctccacccaggccgagcacgagtccctggatgccaaacggccacgggtg
gacggggcgcctgagactcacttcagtcgtgccctaccgggatccctcgtcctgccccac
gtcatgcaggatggcctgatgtctgcatctggcgaggtcaagaaggacacgcagttcagt
gtgaaggtggaggcgtcctcctctgggttacttcagcatatggaccagaatgcttccccc
tccaaactctctaaggaggagctcatccagagcatggacagggtggacagagaaattgcc
aaggtggagcagcagatctttaagctcaagaagaaacagcaacaactggaggtggaagca
gccaagccagtggagccggaaaagccagtgacccccccaccagtggagcgcaagcaccgc
agcatcgtccagatcatctacgacgagaaccggaaaaaagcagaggaggcccataagata
tttgaaggtcttggtcccattctggagctacccctatataaccagccatcagatactaaa
gtgtaccatgacaacataaagacaaaccaactgatgaggaagaagctcatattgtttttc
aagaggagaaaccatgcacgcaaacaaagggaacagaacatctgccagcggtatgaccag
ctgatggaggcttgggaaaagaaggtggaacgcatggaaaacaacccacgccgcaaagcc
aaggacggccgtacgcgagagtactacgagcggcagttccccgagatccgcaagcagcgt
gagcagcaggaacgcttccagagggtgggccagcgagggaccggcctttcggcaaccatt
gcaagaagtgagcatgagatctccgagatcatcgatggcctatctgaacaggagaacaac
gagaagcagatgaggcagctgtccgtcatcccgcccatgatgtatgacactgagcagcgg
cgtgtcaagttcatcaacatgaacggcctgatggaagaccccatgaaggtctacaagtcc
cgccagttcatgaatgtgtggactgaacatgagaaggagatattcagggataagtttgta
cagcacccaaagaattttggcctcatagcttcctatttggaaagaaagtgtgtggcagac
tctgtacattactattacttgaccaagaagaaccagaactacaaaacactggtgaggcgt
aactacaggcggcgaggtcgaaatcagcagataacacggccctcgcaagaagagaagtcg
gacgataaaaacgaagaggaaaaagcggaaagatccgagaaaagggaggatgaggagaag
aaggaagaggaggagaaagaggaaaaagaagaaatcaaggaccttggcagagacaaagac
aagtgtgacggcggggaggacgaggacggaaaggagcagaacacaccacgtggacgcaag
accgccaacagccaagggcgccgcaagggcaggatcaccacgcgctccatggccaacgag
gctgcctccgtgggggccgaggacgcgcctctacccctgcctgagccaagtttgcctgag
ccagtccagcagcccaaacctgagccagttcctaagactgttcgagagccttccaagacc
gctccattgaccatggacagaggaggtgttgagagcggggagacgtctcgctggaccgag
gaggagatggaaatagccaaaaaaggtttggttgagcacggccgtaactggtcagctatt
gccaaaatggtgggcaccaagagtgaggctcagtgcaagaacttctatttcaactacaag
agacggcacaacctggaggacctgctccaacagcacaaacaggaaacacgtcggtccagg
ggggatcgggacgtgtctcagagcgagagcatggcctccaccgtctctgctggagatgat
gacgaggatgaggacaaccctgaagacagtgaaggtccagacaacagctctgacacagag
agcgctccctccccatcccagacggacccctccaaagctggcgggatggcgtcccagcgg
gacgaggactctgccggcatggcagccgtcgccgccgcctccgagcaggacaccgcctcg
gacggcaagggccaggatgcaccaatggaggagctgcgggtgaagctggagaagagtccg
gaggaggctggcggggacgcgggctcccaggaggagcgcggccgcggaggctacgaggcc
caggtgcacaccaagaccgagcccctggacatggagatgagcgtcggggccggcgacgtg
caggtgaaggtggagcctgaagccaaggagaggatggagaagcacggggagccgggtggg
cagcgcgaccaacagcactcggacaacgactccagcgccacgtgcagcgccgacgaggac
gtggaaacggagcccaggatgtacgagaagccgtcgatgctcaaccctgccggctcggtg
ctggtgtcctccgccaagctggcccccatgaacatgcatcagctccagctgcgcgccgcc
accatcccatccatggtcagttcccatagcaacaacccccactgctccatcagatatgcg
gagcggctgggaggcgggctcaggggtcagagcatgtcgtatgtagaccaccacccccac
caaatgtggggttatggatctgacccgcaggtcccggttgcgtacggtcctggtggagtt
atgagtggctacaccatgttccagcaccagatcaaggccgtgcacgagtcagctcaccag
gaggagaagcagcggcaggaccagcggcaggaccagcggcaggaccagcggcaggaccag
cggcaggaccagcggcaggaccaggccgacctggagcgcaggcctggttcaggctcaggc
aagccattctcctacatgccttacgaagtgaagttgtccatggagcaggatgcccatgga
ggtgttgttcgaccaggcactccttaccgtctctcccccagggagcccagcagggcctcg
ccacagccagactctgcccgctacagtgtgccacctgttctccatccatcacccaatcag
atggtccagaacctcacagacggcgtccgcatggctttcccccggcacagaccgcccaac
attccgtctcctcctccgctcattcccacctccaagcccacggacaaaccggctttcatt
cacgggggctccatatcccagggaacgcctgtgacatacctcccctcccacagccacgct
gtctacgggcccgaggcaaccaagagctccgtgggttccatatctctggggctaccaaga
caacaggaccccaccaagcctgtgtcctacataaagcaggaggagtgttctccacgaggt
cagagctcacaagccgagggtcttcactccagagcgcagtacgagggagtggttagaggt
ggtccaatgtctgccatccaggatgtgggcatggtgaggggctcttctgccaaaccacaa
gagggctcacctttcagaggaggttcaatcacacagggcacgccagctctgccgcagtcc
agtatagcagccgacctcctgaagaccaccatcaccaaactgcctacggaggacctgagc
aacccagacaagagcagggcagaggccatggctaagggccacgtcatctatgagggcaag
catagtcacatctactcttatgacgccatcaagaatcctagagaaggtacaagaagcccc
aggacagggcatgagctgaagcgtaattacgagatgatggagggaagcaggggtcatcct
gcgagggaagctgtaccatatgaagggttgataagcagggccagagatggttctcacccc
gactctaaggatcggactgttgtcacaggctccatcatgcaggggactcctagggcatct
gtggaagcctatgaggagggcatgaagtatggcaagcagatcaagactgaaagcccgcct
attcgctcctttgaggggggcatcaccaagggcaagccctatgagggtggtgtgaacaca
atcaaggagatggggcgctccgtccacgagatcccccgccaagacctgcaaggccaggag
agagagaggaagacccccggactggatggctccatcggccagcagtcagccatcaagcat
aatgttaagtcgctcctcaccagccccggcaagctgccccactctgccatgccccagttg
gaggccatggagagggccaagtacgaggagagcaaggcctccgaccgtgtgcgccacacc
tccgtggtcaactccacctctgtcctgcgctccacccaccaggacagcggcaggtcccag
gtcagcccagtgatgtacgaggacgccaatgcccgaaggacccctgtcaactacagcagc
agtagcagcagctcgatgagagcctccccactgctggtgcggggaccggaggggaacatc
tcagctgggaagccggtgtctcaggagcggaagagcgcgctggtcaacgcccaggctggt
agagagagcgttcctgccaggtctcccgtgccgtccgccgaccccatggcctctcatttc
gacccgcaccaccgacccgtcattcccggagaagtgtacagacctccccacctgccccac
cacatggatcccaaccttgttttccacccagcatacatatttccgcggcaaccttctccg
acaggctaccccaacacgtaccagctgtacaccatggagaacacgcgccagaccatcctc
aacgattacatcacctcgcagcagatgcaggtcatccctcgggctgacgtggcccgcgta
ctgtcaccacgggaacatcagattcccataccttaccatcctggaccacgaggtattatt
gatctagcccagatgccacgagctcctatcctgttgtctgaccgcctcacctacctctcc
ggagctcatccccctttctctcctagtgcttacaaccaagcctccatgcttgcagcagcc
agcgtcgagcgggagcgagagagggaccgtgagcagcgtgagcgggagaaggagcgcgat
aaagaacgcgagagggagcagagagaacgggagcgcgcagcggcagcggcagccaatgaa
tacatgcgtggaggtcctgagcgcccgggcaggcctggtagcaacagttacatgcgctcc
ccctcgccctccgtgagggcaccagagggagccaatcaacagcgggccagcattttccag
gccaccaacagcaagaacaacacccctctcatgcccatgtcatcgcctgcagccgcatcc
cagggtcgctacaacacggccgccgacgccctggcagccctggtggacgctgccgcctcc
gccccccagatggacgtggccaaggcaaaggagagcaagcacgaggccccacgcgatgag
gacatgagctcctcctcctcgtctgcccgccgcagtgccgcagccttcagcgagcagcag
gaggccgagaggcgctccatgcagtctccctacagcagtatgggcatgcctggggtcaaa
ggtcattccggctatccagagggtgcggctgcaatggggagggacaagaacgcgcccacc
aagtcccgcatcgaggaagagctccgcactcgagggaagaccaccattaccgctgccaac
ttcattgatgtcatcatcacgcgccagattgcctcagataaagactcgcgtgaaagaagc
tcccaaagctcagactcctccagcagtttgtcgtccagccggtatgacgcccaagccgga
ggagccatcgaagtgatcagccccgccagctccccagctcagagtcaggagaagcccgag
agctccttcccccaggagaaggcctctcagccacccacaggaagcgtgagggcctttgac
atgagccgctaccgtcagcaggtggagcgggacccagggcctccggctccgcagcacccg
cccaccccccagacgcaccgcgtcatgaccctggcagaccacatctcgcatatcataacc
cgggactttgcccgtaatcaagagcctagcccagtccctacatccatgccctcgtcttca
tcctcctcttcctccgcgtcagccacattccagagctcggccccacacgtttctggttct
gggtccggccgggccaaggtgcccagcaactacagccccgagaacccagtcctgagctcc
catcaccagaggactcccagcagagtgtccccagagaatgcccccgagaagccaagatcc
aggccgggtaaatctcctgagcgcggtggtcgaccgcaggagaactatgagcccatctcc
ccaccccagagctactccgccatggacaagccggagccctctgctggtgtgctgcagagc
cagaggagggaggctgacatgcctgagcagaggacggacacacgctcgccagggagcagc
agctatctgcccgccttcttcaccaagctggagaacacttcccccatggtgaaatccaag
aagcaggagatctttcgtaagaaaggtgtcggtgattctgatgttgtcccggcacaacca
ggtacagagatctttaacttgccagcagtaaccagctcaagtaccgtgaatcccaggaac
cactcctttagtgacccggccagtaatctgggcctggaggacatcatccgcaaagccctg
atggggaacatggaggacaggccagaggagtcggcccaggcaggggctccccacacgggc
agcaccaacaaccccaccagcatagcaacagtcagcgagggccggcaggaggccaacccc
tccccaagcacagggaaacaaaagccgcagggaaagcccaacagccgcaaggccaagtcg
cccaatcctggacaggtattccctggggagcgcccatcctccgtgtcctcggtccactct
gagggagactaccactggcaggcgcccacctgggcctgggaggagcgaccctcttctaca
ggctccatgcagttcccgtacaaccccctgaccatgcgcatgctgagcagcacgccaccc
acctccatggcctgcccatcgccctctctgcagtcccagcagcctccgccaccagggccg
ccgccccagtcagcagtgtcggggggagccggccctgtggcaccgccgagccgtgtctgg
gagcgcgagccgctgctgcaggagcagtacgagaccctgtcggacagtgacgactga
DBGET
integrated database retrieval system
