Clupea harengus (Atlantic herring): 105909740
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Entry
105909740 CDS
T09045
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04137
Mitophagy - animal
char04140
Autophagy - animal
char04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105909740 (hif1al)
04137 Mitophagy - animal
105909740 (hif1al)
04148 Efferocytosis
105909740 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105909740 (hif1al)
Transcription factors [BR:
char03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
105909740 (hif1al)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
105909740
NCBI-ProteinID:
XP_012693847
Ensembl:
ENSCHAG00000009718
UniProt:
A0A6P3WAX2
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Position
9:complement(21069840..21089922)
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AA seq
646 aa
AA seq
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MKAAAEPKGMSSDLRKVRSRDAARSRRSQETEVFYELAHSLPLPRRVASHLDKAAIVRVA
LSYMRMQCILATGDANAEPAPDIEELRKSEEEATDSLYQHALDGFVMVITEDGDLVFLSD
SVDKHLGINQLELLGQSAYDFVHPCDQEELRDLLTIKPAPFKKTQSHRQTECNFFLRMKS
TLTSRGRTVNIKSATWKVLHCTGHMRQYRAEGGTAPPLGSYLTLLCEPVPHPSSVEFPLD
CSTFLTRHNMDLGFTECDGRVTELVGYEPEDLIGRSAFEYYHALDFNHVTKSLQTLMSKG
QVSTRHYRFLAKNGGFVWAETKATVIYNSRTSQPEAVVCLNFILSGVEHADVVFSSEQTR
STPTPAPPEEVKVEVPKEVEKEACSGGTSSSSGELYLRLKQSPEELLQLAPAPGDTIVPL
RECADLCFGRPESPDSLPDFPKELCSPELCQLLSPIFDLPASPAPTLSPLATGEVERFFA
IKPDGARGESCTEVVEDMDLEMLAPYISMDDDFQLTALTHFTEAEALAPTDPAPGAPLSG
PSRKRPHDAEEDVPSLVLKWEKRQKNSLIEEELLLTHNLLNCLMDSDGPDELEMLPQQQS
KLLTDRDPLLGATPGLCDSMALMKDTFLLRPPDPVGQDIGPVSALT
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgaaggctgctgctgagccaaaggggatgagctcagacctgcggaaggtgcggtctcgt
gatgcggcgcgctcccggcgtagccaggagaccgaggtgttctacgagctggcgcacagc
ctgccgctgccccgccgcgtcgcctcgcacctggacaaggccgccatcgtgcgggtggca
ctcagctacatgcgcatgcaatgcatcctcgccacaggtgatgctaacgcagagccagcc
cctgacatagaggaactgaggaagagtgaagaggaggccacagacagcctctaccagcat
gcgctggacggcttcgtcatggtgataactgaagatggcgacttggtcttcttgtctgac
agcgtggacaagcacctcgggatcaaccagctggagttgcttggccaaagcgcctatgat
tttgtccacccgtgtgaccaagaggagctgcgtgatctcctgaccatcaaaccagcaccc
ttcaagaagacccagagtcacagacagacggagtgcaacttcttcttgaggatgaagagc
actctgaccagcagaggaagaacagtcaacatcaagtctgccacctggaaggttctccac
tgcacgggccacatgcgccagtacagggctgagggtgggacagcgccccctcttggcagc
tacctgacactgctgtgtgagcccgtccctcacccctccagcgtggagttcccgctggac
tgcagcaccttcctcacacgccacaacatggacctcggcttcaccgagtgcgacggcagg
gtaacagagctcgtgggctatgaaccggaggacctgattggccggtcggccttcgagtac
tatcacgccttggacttcaatcatgtgaccaagagccttcagactttgatgtccaagggg
caggtgagcaccagacactaccgcttcctggctaagaacgggggcttcgtgtgggcagag
accaaggccacggtcatctacaacagcaggacgtcccagccagaggccgtggtctgcctc
aacttcatcctcagtggggtggagcatgcagacgtggtattctcatcggagcagactcgc
tccacgccaactcctgctcctccagaggaagtcaaggtggaggtgccgaaggaggtggag
aaggaggcttgcagcggtggcacctcctcctcctcaggggagctgtacctccgtctgaag
cagagtccagaggagctcctgcagctcgctcccgcaccaggagacaccatcgtccccctc
agagagtgtgcagacctgtgtttcggccgcccggagagcccggactcactgcccgatttc
cccaaagagctctgcagccccgagctgtgccagctactctctcccatcttcgacctgccc
gcatctccagcaccaacactgagtccactggccactggcgaggttgagaggttctttgcc
attaaaccagatggtgcacgtggagagagctgcacagaggttgtggaagacatggaccta
gaaatgctggcaccgtacatctctatggatgacgacttccagctcaccgcactgacccac
ttcactgaggcagaggctctggcccccacagaccccgcccccggcgcacccctctcaggg
ccctccaggaagaggccccatgacgcagaggaagacgtgccctcgctggtgctgaagtgg
gagaagaggcagaaaaacagcctgatagaggaggaactactactgacacacaacctgttg
aactgtttgatggactccgacggtcccgatgagttggagatgctgccccagcagcaaagc
aagctgttgactgacagagatcccctcctgggagccacccctggcttgtgtgacagcatg
gccctgatgaaagacacgtttctgctccgcccccctgatccagttggtcaagatattggc
ccagtgtccgccctcacttga
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