Clupea harengus (Atlantic herring): 105909784
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Entry
105909784 CDS
T09045
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
105909784 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105909784 (rabgef1)
Membrane trafficking [BR:
char04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
105909784 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
105909784 (rabgef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
MitMem_reg
Syntaxin_2
PIN_8
Motif
Other DBs
NCBI-GeneID:
105909784
NCBI-ProteinID:
XP_031427453
Ensembl:
ENSCHAG00000001569
UniProt:
A0A6P8FMK6
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All DBs
Position
8:5066397..5082510
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AA seq
544 aa
AA seq
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MSQRAERRGIHVDQSELLCKKGCGYFGNAAWQGLCSKCWREEYQRSRQKQIQEDWALAEK
LQREEEEAAAYASNQGSQSHPAPQSQAPPTLAPFSKFEEKKTNEKTRKVTTVKKFFSPSS
RTAPKKACECEREERAQGSRRASHGETLLRDLRGMFTPPWEMSASPEESHEGKAPSPSIS
RQSSIETDRVSRDFVDFLKNLQKPGREIHKQSRAFIESMANKKDLGADELSECVQDFYQN
MSDRLMAHFKGSSERVERVMDQVEKYIMTRLYKNVFCPETTDDEKKDLATQNRIRALHWV
TIEMLCVPVDQEIPEVSDSVVKAITDVIEMDSRRVPRDKLACITSCSKHIFNAIRVTRNE
PASADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEK
LDAQSLNLSSEDFERYMSGQASPSGPDSGHGWASGAAGASPGVVQTQLEALSGLSQRQEQ
VLEGVRDLQVELQQWEESVGRQVQGILERYPLELRPPPPAPAIDSDNTDDDGLPPPLTPQ
VFAG
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcgtgcggaacgccgtgggatccacgtggaccagtctgagctgctgtgtaag
aaggggtgcggttacttcggcaacgcagcatggcagggtctgtgctccaagtgctggcgg
gaggaataccagcgatcgcgtcaaaagcagatccaggaggattgggcgctggccgagaag
ctacagagagaggaagaggaggcggcggcctacgctagcaatcagggcagccagtctcac
cccgcccctcaatctcaagccccgcccactctggcgcccttctccaagttcgaggagaag
aagaccaatgagaagactcgcaaggtgaccaccgtcaagaagttctttagcccctcctct
cgcaccgctcccaaaaaagcatgcgagtgtgagcgggaggagagggcgcagggaagcagg
agggcgagtcatggggagactctcctcagagacctcagaggcatgttcactccgccctgg
gagatgagtgcctctcctgaagagtctcatgaggggaaagccccgagcccctcaatctca
cgccagtccagcatcgagacggaccgcgtgtcccgggactttgtggacttcctgaagaac
ctgcagaaaccgggccgagagatccacaagcagagccgggccttcatcgagagcatggcc
aataagaaggaccttggagctgatgagctgtcggagtgtgtgcaggacttctaccagaac
atgtcggaccggctcatggcccatttcaaaggctcctctgagcgtgtggagcgtgtgatg
gatcaggtggagaagtacatcatgactcggctctacaagaacgtcttctgccctgagacc
accgatgacgagaagaaagacctggccactcagaaccgcatccgggcactgcactgggtg
actattgagatgctgtgtgtccccgtggaccaggaaatacctgaggtgtctgacagcgtc
gtcaaagccatcacagacgtgattgagatggactcgaggcgtgtgccgcgggacaagctg
gcgtgcatcaccagctgcagtaagcacatcttcaacgccatccgtgtgacccggaacgag
ccggcgtccgccgacgacttcctgcccacgctcatctacatcgtgctgaaggccaacccg
ccgcgcctgcagtccaacatccagtacatcacgcgcttctgcaaccccagccggctcatg
accggagaggacggatactacttcaccaacctgtgctgtgctgtggccttcatagagaag
ctggatgcccagtctctgaacctgagctccgaggactttgagcgctacatgtctggacag
gcctcgccgtccgggccggattcgggccatggctgggccagcggggcggcgggggcgagt
cccggggtggtgcagacgcagctggaggcgctgtcagggctgagccagcggcaggagcag
gtgctggagggggtgcgggacctgcaggtggagctacagcagtgggaggagagcgtgggc
aggcaggtgcagggcatcctggagaggtacccgctggagctgcgcccgcccccgcctgca
cccgccatcgactccgacaacaccgacgacgacggcctgcccccgccactcactccacag
gtgttcgctggctaa
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