Clupea harengus (Atlantic herring): 105909901
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Entry
105909901 CDS
T09045
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105909901 (cstf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105909901 (cstf1)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105909901 (cstf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
CSTF1_dimer
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
Beta-prop_IFT140_1st
Ge1_WD40
Beta-prop_NWD2_C
Beta-prop_HPS5
PROPPIN
Beta-prop_SPT8
Cytochrom_D1
DUF7099
Beta-prop_VPS8
Frtz
Motif
Other DBs
NCBI-GeneID:
105909901
NCBI-ProteinID:
XP_012694026
Ensembl:
ENSCHAG00000027057
UniProt:
A0A6P3WB36
LinkDB
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Position
5:complement(9574477..9580070)
Genome browser
AA seq
431 aa
AA seq
DB search
MYRPKLTLKDRQHLYRLIISQLLYDGYTNIANNLINEVKPTTVVTPSEQLMQLAKIGMEN
DDSAVQYAIGRSDTVAPGVGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKHIQEAEMLRSIAFHPSGDFLLVGTQHPT
LRLYDVNTFQCFVSCNPLDQHTDTICSVAYNPSANSYVTSSKDGSIKIWDGVSNRCVTTF
DKAHDGAEVCSAIFSKNSKYVLSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQMHRTQGV
FNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgccctaagctcacgttgaaagaccgacagcatctttacaggctaatcatcagc
cagttgttatatgatggttacaccaatatagccaacaacctcatcaacgaagtcaagccc
accactgtggtcaccccctctgaacagctcatgcagctcgctaaaataggaatggaaaat
gatgacagtgcagtgcagtacgccattggccgctcggacaccgtggctcctggagtgggc
atcgacctggagtttgacgccgatgtacaaaccatgtcccccgaagcgtccgagtacgag
acctgctacgtgacctcgcacaagggcccttgccgagtggctacgtacagccgtgacggg
cagctgatcgccaccgggtctgccgacgcttctattaagatcctggatacagagcggatg
ctggccaagagcgccatgccaattgaagtaatgatgaacgagacggcgcagcagaacatg
gagaaccacccggtcatccggactctctacgaccacgtggacgaggtcacatgcctggcc
ttccaccctaccgaacagatcctggcgtcaggctcgcgagactacacactcaagctgttt
gactactccaagccttcagccaaaagagccttcaaacacatacaggaagcggagatgctg
cgctcgatcgccttccacccctcgggtgacttcctgttggtgggcacgcagcaccccacg
ttgcgcctctacgacgtcaacaccttccagtgcttcgtctcgtgcaacccgctggaccag
cacacggacaccatctgcagtgtggcctacaacccgagcgccaacagctacgtcacctcc
agcaaggacggcagcatcaagatatgggacggcgtgtccaaccgctgcgtcaccactttc
gacaaggcccacgacggcgccgaggtctgctcggccatcttctccaagaactccaagtac
gtcctgtccagcgggaaggactcggtggccaagctgtgggagatctccaccgggcgcacg
cttgtcaagtacacgggcgcgggtctgagcggccgtcagatgcaccgcacgcagggcgtg
ttcaaccacacggaggactacgtgctgctgccggacgagcgcaccatcagcctgtgctgc
tgggactcgcgcacggccgagaggaagaacctgctctcgctcggacacaacaacatcgtg
cgctgcatcgtccactcgcccaccaaccccggcttcatgacctgcagcgatgacttccgg
gcgcgcttctggtaccgtcgcaccaccactgactga
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