Clupea harengus (Atlantic herring): 105909962
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Entry
105909962 CDS
T09045
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105909962 (pdzrn3b)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105909962 (pdzrn3b)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
105909962 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_5
Prok-RING_4
Sina_ZnF
zf-TRAF
PDZ_Tricorn
zf-rbx1
TRAF3_RING
LemA
U-box
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
105909962
NCBI-ProteinID:
XP_012694086
Ensembl:
ENSCHAG00000025689
UniProt:
A0A6P3WAY8
LinkDB
All DBs
Position
5:complement(1254659..1348932)
Genome browser
AA seq
1089 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLDIKCDNHGRGCEKVVKLQHLAEHAEMCDYSPAKCRNKGCNEVL
NLKDMDAHMRETCDYRAVGICENGCGLMLTHREQKLNNHCCLKALKAHNSALHGKVVSLD
KEFKKQSLKSNKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLSKTLAPPCKGG
ESKSVTMVLHRESGSLGFNIVGGRPCVENETATSNEGIFVSKIIENGPADKDGGLQIHDR
IMEVNGKDLSKATHEQAVEAFRNAKDPIMVQVLRRAPRPKPAGPAGDTQVLDMGTQTDIT
FQHIMALSKLPAASPPDAVLEQYLLPEEHSPAHEYFDPADFLEGMQQEMEREELEYEEVD
LYRSNMQEKLGLTVCYRTDDEDETGIYVSEIDPNSIAARDGRIREGDRIIQINGIEIQNR
EDAVALLTSEENQNVCLLVARPEIQLDEGWMDDDRNDFLDDLHLDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSQRHEKDSGVGRTDESTRNDESSEQENLGDEQATGTFLGT
TLGSRRRLAYSQDTLGSGDLPFSSESLISESDFLGIPADECERFRELLELKCQVRSAAGS
GALYCPGMAAAAAAAAGGGGLGGGGEEGVDKELELLNEELRTIELECLSIVRAHKMQQLR
EQYRESWMLHNSGFRNYNTSVDAPHRHELADITELPEKSDKDSSSAYNTGESCRSTPLTL
ELSPDNSLRRANESLPEGVTANPSGRVLKPLLSPVQEVCGGPSRGRATSSSSSSSSKEPE
NGTQAEGQQQQQQQRKGDAPAGGKGGRSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQS
QMSLVSMCPLAPSSGRAATGDGPNGSSELGPKMEWKVKIRSDGTRYITKRPVRDRLLKER
ALRIREERSGMTTDDDAASELKMGRYWSKEERKQHAVRSREQRQRREFMKQSRMDSLKEQ
GGETGAGGTGADEPRKELNIIELSHKKMTKKRNKKIFDNWMTIQELLTHGTREPDGSRVY
NSLLSVTTV
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagctggatcgttttaaaggggctgtggacccagacttcaaatgcaacttg
tgtaataaagttttggaagatccgctcacaaccccgtgtggtcacgtcttttgcgctggc
tgtgtgctgccgtgggtcgttcagcaaagcagctgcccagtcaagtgccaaaggatctcc
actaaagagttgaaccacgtccttcccctgaaaaacctgattctgaagttggacataaag
tgtgacaatcatgggagaggctgtgagaaagtggtgaagctgcagcatcttgcggaacat
gccgagatgtgtgactactctccggctaaatgcagaaacaagggatgcaacgaggtgctg
aacctgaaggatatggatgcccatatgcgcgaaacgtgtgactacagagcagttgggata
tgcgaaaatggatgtggtttgatgctcacccacagagagcaaaaactcaacaaccattgc
tgtttgaaagccctgaaagcgcataatagcgcgttgcatggaaaagtggtcagcctcgac
aaggagtttaaaaagcagtctctgaagtcgaacaaacgggagaagtcacttctcgctcaa
ctctctgccgtccacaacgagctacaaatgacagcgctgaaataccaaaagaaatttact
gagtacagtgcaaggattgactcgctcagcaagaccctggctccaccatgcaagggtgga
gaatccaaaagtgtcacaatggtgcttcatcgggagtctggatcgcttgggttcaacatc
gtaggaggaaggccatgtgtggaaaatgagactgcgacatcaaatgaaggcatctttgtg
tccaagataatcgagaatggaccagcagacaaagacggaggacttcagatccacgaccgc
attatggaggtcaatggtaaggacctctccaaggccacgcatgagcaggcggtggaggcc
ttccgcaacgccaaagaccccatcatggtgcaggtgctgcggcgcgccccgcggcccaag
ccggccggccccgccggggacacgcaggtgctggacatgggcacgcagacggacatcacc
ttccagcacatcatggccctcagcaagctgcccgccgccagcccacccgacgccgtgctg
gagcagtacctgctgcccgaggaacactctcctgcacatgagtactttgaccccgcggac
ttcctggaaggcatgcagcaggagatggagcgcgaagagctggaatatgaggaagtggat
ttataccgatcgaacatgcaggaaaagctggggctgaccgtgtgctacagaaccgacgac
gaagacgagaccgggatctacgtcagcgaaattgatccaaacagcattgcagcgagggat
ggacgaatcagagaaggtgatcggatcattcagatcaatggcatagagatccagaaccgg
gaggacgcggtagccctgctcaccagcgaggagaaccagaatgtctgtctgctcgtggct
cgacccgagatccagctggatgagggctggatggatgacgacaggaacgacttcctggac
gacctgcacctcgacatgctggagcagcagcaccaccaggccatgcagttcactgccagc
atgctccagcagaaaaagcatgaggaggacggcggcacgaccgacacggccacgctgctc
tcacagcggcacgagaaggacagcggtgtgggccgcacggacgagagcacacgcaacgac
gagagctcggagcaggagaacctgggcgacgagcaggccaccggcaccttcctgggcacc
acgctgggcagccggcggcggctggcctacagccaggacacgctgggcagcggcgacctg
cccttcagcagcgagtcgctcatcagcgagtccgacttcctgggcatccctgcggacgaa
tgtgagcgcttccgtgaactcctggagctcaagtgccaggtgcgcagcgcggccggcagt
ggcgccctctactgccctggaatggcagcggcggcggcggcggcagcaggtggaggaggt
ttaggaggaggtggagaggagggagtggacaaggagctggagctgctgaacgaggagctg
cgcaccatcgagctggagtgcctgagcatcgtgcgggcgcacaagatgcagcagctgcgg
gagcagtaccgcgagtcctggatgctgcacaacagcggcttccgcaactacaacaccagt
gtggacgcgccgcaccgccacgagctggccgacatcaccgagctgcccgagaagtcagac
aaagacagctcgagcgcctacaacacgggcgagagctgccgcagcacgccgctcacgctc
gagctctccccggacaactcgctccgccgtgccaacgagagcctgcccgagggcgtcacg
gcgaaccccagcgggagggtcctcaagcccctgctgtcacccgtccaggaggtctgtgga
ggtcccagccgagggcgagccacgtcctcctcgtcctcgtcgtcctccaaggagccggag
aacgggactcaagccgagggtcagcagcagcagcagcagcagcgaaagggggacgccccc
gccgggggcaaggggggccgctcgccctacaagcacgcccacatcccagcccacgcacag
cactaccagagctacatgcagctcatccagcagaagtcggccgtggagtacgcccagagc
caaatgagcctcgtcagcatgtgcccgctcgccccgtcttcaggcagggccgcgaccggc
gacggccccaacggcagctcggagctgggtcccaagatggagtggaaggtgaagatccgc
agcgacggcacgcgctacatcaccaagcgcccggtgcgcgaccgcctgctgaaggagcgc
gcgctgcgcatccgcgaggagcgcagcggcatgaccacggacgacgacgccgccagcgag
ctcaagatgggccgctactggagcaaggaggagcgcaagcagcacgccgtgcggtcccgc
gagcagcggcagcgccgcgagttcatgaagcagagccgcatggacagcctcaaggagcag
ggcggcgaaaccggcgccggcgggacgggcgccgacgagccgcgcaaagagctcaacatc
atcgaactgagccacaagaagatgacgaagaagcgcaacaagaaaatcttcgacaactgg
atgaccatccaggagctgctgacacacggcacgcgtgagcccgacggctcgcgcgtctac
aactccctgctctcggtcactaccgtctag
DBGET
integrated database retrieval system
