Clupea harengus (Atlantic herring): 105910039
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Entry
105910039 CDS
T09045
Symbol
abca3b
Name
(RefSeq) phospholipid-transporting ATPase ABCA3
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
105910039 (abca3b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
char02000
]
105910039 (abca3b)
Transporters [BR:
char02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
105910039 (abca3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
RsgA_GTPase
AAA_23
AAA_29
AAA_15
AAA_22
AAA_27
Motif
Other DBs
NCBI-GeneID:
105910039
NCBI-ProteinID:
XP_031430204
Ensembl:
ENSCHAG00000026851
UniProt:
A0A6P8FU63
LinkDB
All DBs
Position
1:complement(27519692..27545127)
Genome browser
AA seq
1712 aa
AA seq
DB search
MAVLRQFGLLLWKNYLQQKRQILVTLVEVALPMLFSAILIALRQRVPFTNYPNATHYNSF
SVDHVPFKLEFGNYQLVYVPSNASVVRQVAEDVQRSLGVKVITSVRGFETEEQFEDFVKT
DPRSGKVLAAVVFKNTFIHDDDPLPLEVNYHLRFPYSPRFAPAREKSELNPNNDMDWHTL
KLFPLFQLPGPREQHDLRGGTPGYYREGFLTLQHAVDRAIMRAYNKTAATTLLAQTRVVL
SRFPFPAFIYDVFILVIQSQLPLLLVLSFTYTSLNIIRAVVQEKERKLKEYMRMMGLSNW
LHWSAWFLVFFLFLSISIFFVTLLFCVKVSTKGAVLTYSDPTLVFVFLLVFAVATINFSF
MISSFFCRANVAAAAGGFIYFLSYVPYVFLWPRYDLLSHAQKVSACLISNVAMAMGAQLI
GMFEGKGTGVQWSNLFEPVSVDDDFSLAQVMGLLLLDAVLYGMLACYMETVFPGEYGVPR
PWYYFMLPSYWCSTPRVAFLKEKEEEEDAEKALKGEFIEEEPAGLVSGVKIKHLGKVFKV
GNKTKEAVRDLTLNMFEGQITILLGHNGAGKSTTLSMLTGLFPPSSGRAYINGYDISQDM
SLIRRSLGLCPQHDVLFDNLTVREHLLFYAQLKGYPQEKIPDEVDRIIRVLNLEDKRDSR
SKTLSGGMRRKLSIGIALIGDSKVVMLDEPTSGMDPCARRATWDLLQGEKRGRTILLTTH
FMDEADLLGDRIAIMAAGELQCCGSPLFLKNKYGAGYHMVIVKDALCNVSEITRLVHLYV
PNATLESSAGAELSYILPKESSNRFELLFAELEMNREELGIASYGASVTTMEEVFLRVGK
LVDSSLDIQAIQLPALQYQHERRSHDWTMDDASSISGLTDVTDFTDSGTLISEDCSNIKL
NTGARLYMQQFYAMFLKRALYSWRNWKVMVAQFLVPLVFTVLALVVARTLPGRHNTPQLK
LSLDRYGPTHVPVALEPTAGPLAVALAQAYSSQLPEQRATPNNVTDFSEYVLRNAEEEGG
AFNEHCVVGVAFRGKSKSFVEATAYFNNQGYHTPATALLLLDNALYRKLAGPNASIRAGN
DPMPRNLSETAQSQLSVSQTGFAIAINLMYGMASLSSTFALLLVTERSLKCKHVQQVSGV
YLSNYWFSALLWDLINFLLPCMLMLVVFRVFAVKAFVEHNHLVDVLLVLLLFGWAVVPLM
YLLSFLFSTAATAYTRLTIFNIISGTATFLAVTIMTIPELQLQDLSRILDKVFLLFPNYC
LGMSFSQFYQNYELISFCTPNPIAEAFCKYYNLTYQENYFSMMSPGIGRYLVAMALQGVL
FIVLLFLVELQCVRTLKRMLGSLCWRHRKGHLLAEAALRSEDRDVAEERKRVLECQPVVE
SMVGSPLVLTELTKVYTGGPCLLAVDRLSLAVGKGECFGLLGFNGAGKTTAFKMLTGDET
VTSGDAYIDGYSILRDIKKVQQRIGYCPQFDAVLDHMTGRETLSMYARLRGVPEKYASGC
VENVLRSLLLEPHADKLVRSYSGGNKRKLSAGMALIGSPPVIFLDEPSTGMDPVARRLLW
DAVTRTRESGKAVIITSHSMEECEALCTRLAVMVNGQLKCLGSPQHLKSKFGSGYTLLAK
VRLESEVEETLLQLFKEFIESTFPGSLLKDEHQGMVHYHLTDKSLTWAQVFGTLEAAKEK
YCIEDYCVSQISLEQVFLSFAQFQHCAEGSRK
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgctacggcagtttggattacttctgtggaagaactacctacagcagaagcgg
cagattctggtgacgttggtggaggtcgctctgcccatgctcttctcggccattctgatt
gccctgcgccagcgtgtgcccttcacgaactacccaaatgcaacacattacaacagcttc
tctgtggatcacgtgccctttaagttggaattcggcaactaccagctggtctatgtgcct
agcaatgccagtgtggtgcgccaggtggctgaagatgtgcagcgcagcctgggtgtcaag
gtcatcacatctgttcgtggcttcgagacggaagaacagtttgaagactttgtgaagaca
gaccctcgttcaggaaaggttttggctgctgtggtgtttaagaacacattcatccatgat
gatgatcctcttccattagaggtgaattatcacctgcggttcccatacagcccccgcttt
gcgcctgccagggagaagtcggagctgaaccccaataatgacatggactggcacacgctt
aaactcttccccctattccagctgcctggaccccgtgagcagcacgaccttcgcggtggt
acaccaggatattatcgtgagggctttctcacgctgcagcatgcggttgaccgggctatc
atgcgcgcgtacaacaaaactgcggcgacgactctgctggcgcagacgcgtgtggttctg
tcgcgctttcccttcccagccttcatctatgatgtgttcatcctggtcatccagagccag
ctgcccttgctgctggtgctcagcttcacctacacttcactcaacatcatacgtgctgtg
gtgcaggagaaagagaggaaactcaaggagtacatgcgaatgatgggtcttagtaactgg
ctccactggagcgcctggttcctcgtgttcttcctcttcctctccatctctatcttcttc
gtcacactgctcttctgtgtgaaggtcagtaccaaaggagcagtattgacctacagcgat
ccaaccctggtgtttgtgttcctgctggtgtttgctgtcgcaactatcaacttcagcttc
atgattagctccttcttttgcagagccaatgttgcggctgcggcaggtgggttcatctac
ttcctgagttacgtgccatacgtcttcctgtggcctcgctacgaccttctgagccacgcc
caaaaagtctctgcctgcctcatctcaaacgttgccatggcaatgggagcacagctcatc
ggcatgttcgagggcaaaggcacaggggtgcagtggagcaacctgtttgagccggtgagc
gtggatgatgacttctcgctggcacaggtgatggggctgctgctgctggatgcagtgctc
tatggcatgctggcctgctacatggagacagtcttcccaggggagtacggggtcccgcgg
ccctggtactacttcatgctgccctcctactggtgcagcactccccgtgtggcgttcctg
aaggagaaggaggaagaggaggatgcagagaaggcgctgaagggagagttcatagaggag
gagccggccggcttggtgtcaggagttaagatcaagcatctaggcaaggtcttcaaagtg
ggaaacaaaacaaaggaagcagtgagagatctgacactgaacatgtttgaaggccagatc
actattctactgggacacaatggagctggcaagagcactactctgtccatgctgacaggt
ctattccccccctccagcggtcgggcctacattaatggctatgatatcagtcaggacatg
tcacttattcgccgcagcttgggcctctgtccacagcatgacgtgctgtttgacaacctg
actgtcagggagcatctgctcttctatgcacagctgaaaggatatccacaagagaaaatc
ccagatgaagtggaccggataatccgtgtgctgaacctggaggacaagcgggacagtcgc
tcaaagactctctccggaggcatgaggaggaagctctccatcggcatcgccctcatcgga
gactccaaggtggtgatgctggatgagcccacctcgggcatggacccctgcgctcggcgc
gccacctgggacctgctgcagggcgagaagcgcgggcgcaccatcctgctcaccacacac
ttcatggacgaggccgacctgctgggggaccgcatcgccatcatggctgccggagagcta
cagtgctgtggctcgccactcttcctcaagaacaaatatggtgctggctaccacatggtg
atagtaaaagatgcgctctgtaatgtgtctgagattactcggctggtgcatctgtatgtg
cctaacgctacgctagagagcagtgctggagcagaactctcctacatattgcccaaagag
agcagcaaccgtttcgagcttctgtttgccgagctcgagatgaacagggaagagctgggc
atcgccagttacggagcgtctgtcaccaccatggaggaagtgtttctgagagttgggaag
ctggtggactccagtctggacatccaggccatccagctgccggcactgcagtaccagcac
gagcgccggtcacatgactggaccatggacgacgccagcagcatcagtgggctgactgac
gtcacagatttcactgacagcggcacactcatctcagaggactgctccaacatcaagctc
aatactggggccagactctacatgcagcagttctatgccatgtttctgaagcgagctctg
tatagctggcggaactggaaggtgatggtggcccagttcctcgtgccgctggtgttcaca
gtgctggcgctggtggtggcccgcaccctccccggtcggcacaacaccccccagttaaag
ctgtcgctggaccgctacggccccacccacgtgcctgtagccctggagcccacagcgggg
cccttagctgtggctctggcccaggcctacagcagccagctgcccgagcagagggccaca
cccaacaacgtcacagacttctcagagtatgtgctgcgcaatgctgaggaggagggcgga
gccttcaatgagcactgtgtggtgggtgtggctttccgaggcaaatccaagtcattcgtt
gaggcgacggcatacttcaacaaccaaggctaccacactcccgccactgcccttctgctg
ctggacaatgccctgtaccgcaagctggctggacccaacgcctccatacgcgcggggaac
gaccctatgccacgcaacttatctgaaacggcacagagccagctctctgtgagtcagaca
ggctttgccattgcaataaacctgatgtacggaatggcgtctttgtccagcacatttgcg
ctgctgctggtgaccgagcgctcactgaagtgcaagcatgtgcaacaagtcagcggggtg
tacctgtccaactactggttctccgccctgctctgggatctcatcaattttctgctgccc
tgcatgctcatgctggtggtgttcagggtgtttgccgtcaaggcgtttgtggagcataac
cacctggtggatgtgctgctggtgctgctgctcttcggctgggcggtggtgccgctgatg
tacctgctcagcttcctgttctccacggcagccactgcctacacccgcctcaccatcttc
aacatcatcagcggcaccgcaaccttcctggcagtcaccatcatgaccataccagagctg
caattacaggacctatctcgcatcctggacaaggtcttcctgctcttccccaactactgt
ctgggcatgtccttcagccagttctaccagaactatgagctcatttccttctgcaccccc
aaccccattgcagaggctttctgcaaatactacaacctcacctaccaggagaactacttc
tcaatgatgtccccaggcatcggtcgctacctggttgccatggctctacagggtgtgctc
ttcatcgttctcctcttccttgtggagctgcagtgtgtgcgcacgctaaagcgcatgctg
ggctccctctgctggagacacaggaaggggcacttgctggctgaagcagcattacggtct
gaggacagggatgtggctgaagagaggaagagagttctagaatgccagccagtggtggag
tccatggtggggagcccactcgtcttgacggagctcaccaaggtgtacacagggggacca
tgtctgctggcggtcgatcggctctctctggccgtgggcaagggcgagtgctttggcctg
ctgggcttcaatggagcggggaaaaccaccgcctttaagatgctcactggagatgagact
gtaacttcaggagatgcctacattgatgggtacagcatcttgagggacatcaagaaggtt
cagcagcggattgggtactgtcctcagtttgatgcagtgctggatcacatgacaggccgt
gaaaccctaagcatgtatgcgaggttgaggggtgtgccggagaagtacgcttccggctgc
gtggagaacgtgctcaggtccctcctgctggagcctcatgctgacaagctggtccgcagc
tacagtgggggcaacaagaggaaactgagtgccgggatggctctgattggtagcccacct
gtcatctttctggacgagccatcaacgggcatggatcctgttgccaggcgactgttgtgg
gatgccgtcacccgtacacgcgagtctggcaaagcagtcatcatcacttcacacagcatg
gaggagtgtgaggcgctatgcactcgtctggccgtgatggtgaacggccagctgaagtgt
ctgggcagcccccagcacctgaagagcaagttcggtagtggctacaccctcctggccaag
gtgcgcttagagagcgaggtggaggagaccctgctgcagctcttcaaagaattcattgag
tccacattcccagggagcttactgaaggatgaacaccagggtatggtgcactaccacctg
actgacaaaagcctgacatgggcacaggtgtttgggaccctggaggcagccaaagagaag
tactgcatagaagactactgtgtcagtcagatctctctggagcaggtgttcctgagcttc
gcccagttccagcactgtgccgagggcagtcgcaagtga
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integrated database retrieval system
