Clupea harengus (Atlantic herring): 105910172
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Entry
105910172 CDS
T09045
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105910172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105910172
03036 Chromosome and associated proteins [BR:
char03036
]
105910172
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105910172
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
105910172
Chromatin remodeling factors
BAF complex
105910172
PBAF complex
105910172
GBAF(ncBAF) complex
105910172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
DEAD
HDA2-3
DUF2009
Motif
Other DBs
NCBI-GeneID:
105910172
NCBI-ProteinID:
XP_031419671
Ensembl:
ENSCHAG00000011670
UniProt:
A0A6P8F6B0
LinkDB
All DBs
Position
26:7452369..7474696
Genome browser
AA seq
1629 aa
AA seq
DB search
MSTPDPPEGGAPRPGPSPGSAHNMMGRSPGPPTSSAHTIPPSGPPGFTQENMHQLHKQPV
EGTLEKNIAEDPRFSQMKGMSMRPGGHGGMGPPPSPMDQHSQGYPSHLSGSEHGSSPVSG
SGPPSGPLLPSSSSGPGSGPMETSEPQPMSQPTRSVVSVGGPSGGPVNTDSTCGPTPFNQ
NQLHQLRAQIMAYKILARGQPLPDHLQMAVQGKQPMPGMQQQPMPTIPPCTGPATGPGPM
GAGFSRGHGMVGPNMPMAGPSGGPNMQGQPHGGPPKNWPEGPMGNATTPSNASQKLIPPQ
PTGRPSPTPPSVPSAASPVMPPQNQMPGQPGQPTSMVSMHQKQIRITPIQKPCGLDPVDI
LQEREYRLEARITHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR
DTALETALDARAYKRSKRQSLREARITEKLEKQQKIERERKRRQKHQEYLNSILAHAKDF
KEYHRSITGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKK
DKRLAYLLQQTDEYVANLTDLVRAHKAVQALKGKKKKKKKKKTTTTKVETAEGQAGGVGP
DGEALDETSQMSDLPVKVIHVDSGKVLTGGEAPKAGQLETWLEMNPGYEVAPRSDSEDSG
SEGEEEEEDEQPQSSQAAADDKKKITDPDDEVDARDIIDNAKQDVDDEYSSAAFERGLQS
YYAVAHAVTEKVDKQSSLLVNGQLKHYQIQGLEWLVSLYNNNLNGILADEMGLGKTIQTI
ALITHLMEYKRLNGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSRAARKAFVPQLRT
GKFNVLLTTYEYIIKDKQILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLT
GTPLQNKLPELWALLNFLLPTIFKSCITFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK
VLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKG
GTKALMNTIVQLRKICNHPYMFQQIEESFSEHLGFSGGFVQGPDLYRASGKFELLDRILP
KLLVTNHKVLLFCQMTSLMNIMEDYFAYRSFKYLRLDGTTKAEDRGMLLKTFNDPASDYF
VFLLSTRAGGLGLNLQSADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV
EEKILAAAKYKLNVDQKVIEAGMFDQKSSSHERRAFLQAILEHEEQDEGASAERQVQEED
EVPDDETLNQMIARSEEEFDHFMRMDLDRRREEARNPKRKPRLMEEDELPSWILKDDAEV
EALTCEEEEEKMFGRGSRQRRDVDYSDALSEKQWLKAIEGDTLDEAEEELRHKKATRKRR
RDRDLDTPGPSTSGSVRSGGRDRGRERERERDRDRDDDGKRQRRRGRPPSEKISPNPPIL
TKKMKKIVDAIIKYKDSSNGRQLSEAFIQLPSRKELPEYYELIQRPMDFRKIKERIRSHR
YRSLNDLERDVMLLCENAQTYNLEGSLIYEDSIVLQSVFTSLRQKIEKEEEEREGEESEE
EVEADEGSESEVRSVKVKIKIGRKEKEKTTEREKSRRRGGRTRAKPVVSDDDTEEEQEEE
RSAAASEED
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactccggatcctccagagggaggggcccccagacctggcccttcccctggctcc
gcccacaacatgatgggtcgcagcccgggcccgcccacctcgtcagcccacaccatccct
ccatcaggaccaccagggtttacccaggagaacatgcatcagttacacaaacagcctgtg
gagggcacgctggagaagaacatcgctgaggaccctcgcttcagtcagatgaaggggatg
tcgatgagacctggaggccacggtggcatggggccgcctccaagtcccatggaccaacac
tcccaaggttatccatctcatttgagtggctcagagcacggttccagtccagtgtctggc
agtggtcctccttcaggtcctctcctgccctcctcctcctctgggcctggttctgggccc
atggagaccagcgagccccagcccatgagccaaccgacccgctcggtggtgtcggtcggg
ggacccagcggcggtcctgttaacacggacagcacatgcgggcccaccccgttcaaccag
aaccagctgcaccagctgcgcgctcagatcatggcctacaagatcctggcacgtgggcag
cctctaccggaccacctgcagatggcggtgcagggcaaacagcccatgccaggcatgcag
cagcagcccatgcccaccatccccccgtgcaccggtccagccacgggccctgggcccatg
ggcgccgggttcagcagaggtcacggaatggtggggcccaacatgcctatggctggtcct
tcagggggtcccaacatgcagggacagcctcacggaggaccccccaaaaactggcctgag
ggacccatggggaatgctaccaccccctccaacgcctcccagaagctgatccccccacag
cccacgggcagaccctcccccacacccccctcggtgccctctgcggcctcccctgtcatg
cccccccagaaccagatgccagggcaacccggccagcccacatccatggtgtccatgcac
cagaagcagatccgcatcacgcccatacagaagccctgcggtctggacccagtggatatc
ctgcaggagagagagtacaggctggaggcccgcatcacacatcgtatccaggaactggag
aatctcccgggttccctggctggagacctccgcaccaaagccaccatagagctcaaagcc
ctgcggctgcttaacttccagagacagctgcggcaggaggtggtggtgtgtatgcggcgg
gacacggccctggagacggccctggacgcgcgggcctacaagcgcagcaagcggcagtcc
ctgcgtgaggctcgcatcaccgagaagctggagaagcagcagaagatcgagagggagcgc
aagcgccgccagaaacaccaggagtatttgaacagcatcctcgcgcatgctaaggacttc
aaggagtaccaccgctccatcacaggcaagatccagaagctgaccaaagccgtggccacc
taccacgccaacactgagcgcgagcagaagaaggagaacgagcgcatcgagaaagagaga
atgaggagactgatggctgaggatgaggaaggctaccgtaagctcatcgaccagaagaag
gacaagcgcctggcctacctgctgcagcagacggacgagtacgtggccaacctcaccgac
ctggtgcgcgcccacaaggccgtgcaagccctcaaggggaagaagaagaagaagaagaaa
aagaagacgacgacgacgaaggtggagactgcagaaggtcaggcaggaggagtggggcct
gatggagaggcgctggatgagaccagtcagatgagtgacctgccggtgaaggtcatccac
gtggacagcgggaaggtcctgaccgggggggaggcacccaaggcagggcagctggagacc
tggctggagatgaacccaggctatgaagtggcacccaggtccgacagcgaggactctggc
tctgagggagaggaggaggaagaggatgagcagccccagtcctctcaggctgctgcggac
gacaagaagaagatcaccgaccccgatgacgaagtggacgcccgagacatcatcgataat
gctaagcaggatgtagacgatgagtacagcagtgcagccttcgaacgcggcctgcagtcc
tactacgccgtggcccacgccgtcacagagaaggtggacaagcagtcctccctgctggtc
aacggccagctcaagcattaccagatccagggtctggagtggttggtgtccctctacaac
aacaacctgaacggcatcctggctgacgagatgggcctggggaagaccatccagaccatc
gccctcatcacccacctaatggagtacaagcgcctcaatgggcccttcctcatcatcgtg
cccctctcgacgctctccaactgggtgtatgaatttgacaagtgggccccgtctgtggtg
aaagtgtcctacaagggatctcgtgccgcgcgaaaagcattcgtccctcagctgcgcact
ggcaagttcaatgtactcttgacaacctatgagtacattatcaaggacaagcaaatcctg
gccaagatccgctggaagtacatgatcgtggacgagggccaccgcatgaagaaccaccac
tgcaagctgacgcaggtgctgaacacacactacctggcgccgcggcgcgtcctcctcacc
ggcacgccgctgcagaacaagctgcccgagctctgggccctgctcaacttcctgctgccc
accatcttcaagagctgcatcaccttcgagcagtggttcaacgcgcccttcgccatgacc
ggagagaaggtggacctgaacgaagaggagaccattctcatcatccgtcgtctgcacaag
gtgctccgccccttcctgcttaggaggttgaagaaggaagtggaggctcagcttcctgag
aaggtggagtacgtgatcaagtgtgacatgtcagccctgcagagggtgctgtaccgccac
atgcaggccaaaggagtcctgctgacagatgggtcagagaaggacaagaagggcaaagga
gggaccaaggctctgatgaacaccatcgtgcagctgaggaagatctgcaatcacccctac
atgttccagcagatcgaggaatccttctctgagcatctgggtttctctggaggctttgtt
caaggccctgacctgtatcgcgcctcggggaagtttgagctgctggaccgcatcctgccc
aagttactggtcaccaaccacaaggtgctgctcttctgccagatgacctccctcatgaac
atcatggaggactactttgcctatcgcagtttcaagtatctgcgtctggatggcaccact
aaggctgaagaccgtggcatgctgctgaagaccttcaacgacccagcctccgactacttc
gtcttcctgctcagcaccagggccggggggctgggcctcaacctgcagtcggccgacacc
gtggtcatcttcgacagcgactggaacccacaccaggacctgcaggcccaggaccgggcc
caccgcatcgggcagcagaacgaggtgcgcgtgcttcgcctctgcaccgtcaacagtgtg
gaggagaagatcctggccgccgccaagtacaagctgaacgtggaccagaaggtgatcgag
gccggcatgttcgaccagaagtcctccagccacgagcggcgggccttcctgcaggccatc
ctggagcacgaggagcaggacgagggagccagtgcagagaggcaagtacaggaggaagat
gaagttcccgatgatgagaccctcaaccagatgatcgcccgaagtgaagaggagtttgac
cacttcatgcgcatggatctggaccggcggcgcgaggaggcgcgcaaccccaagcgcaag
ccccgtctgatggaggaggacgagctgccctcctggatcctgaaggacgacgcggaggtg
gaggcgctcacctgcgaggaggaggaggagaagatgttcggccgcggctcgcgccagcgc
agggacgtggactacagcgacgcgctctctgagaagcagtggctcaaggccatagagggc
gacacactggacgaggctgaggaggagctgaggcacaagaaggcgacccgcaagaggaga
cgggaccgcgacctggacaccccgggcccgtccacgtccgggagcgtacgaagcgggggg
agggacaggggcagagaaagagaacgagaaagagacagagacagggatgacgatggcaag
agacagaggagacgaggccgtcccccctccgaaaagatctcgcccaatccccccatcctg
accaagaagatgaagaagatcgtcgacgccatcatcaagtacaaagacagcagtaatggc
cgtcagctgagtgaggcgtttatccagctcccctcccgcaaggagctgccggagtactat
gagctcatccagaggcccatggacttcaggaagatcaaggagaggatccgcagtcacagg
taccgcagtctcaacgacctggagagagatgtaatgctgctgtgtgagaacgcccagacc
tataacctggagggctctctgatttatgaagactccatagtgctgcagtctgttttcacc
agcctgcggcagaagattgagaaggaggaggaggagagagagggagaagagagtgaggag
gaggtggaggccgatgaaggatctgagtctgaagtgcgttcggtgaaagtgaagatcaag
attggtcgtaaggagaaggagaagaccacagagagagagaagagtcgcaggcggggcggt
cgcaccagagccaaacccgtagtgagtgatgacgacactgaggaggagcaggaggaggag
cgctctgccgctgccagtgaggaagactga
DBGET
integrated database retrieval system
