Clupea harengus (Atlantic herring): 105910237
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Entry
105910237 CDS
T09045
Symbol
usp42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
105910237 (usp42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105910237 (usp42)
Enzymes [BR:
char01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
105910237 (usp42)
Peptidases and inhibitors [BR:
char01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
105910237 (usp42)
Ubiquitin system [BR:
char04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
105910237 (usp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
DUF6480
Motif
Other DBs
NCBI-GeneID:
105910237
NCBI-ProteinID:
XP_012694382
UniProt:
A0A6P3WBI0
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All DBs
Position
23:complement(11545092..11554413)
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AA seq
1221 aa
AA seq
DB search
MTIVDKPLEKSDLESVRGNRSGAMASFSSGDMDGSCSSWGGSSSTSDLPRAKTPCMGPTP
GATLYSAAATTTTTTTSSTTPLTTERPKEQVMTTSGDGIALPQKVLFPAERLNLKWHQMH
RIGAGLQNLGNTCFLNSALQCLTYTAPLANYMMSREHSKTCHEPGFCMMCTMQNHVTQVF
ANSGNVIKPIGVLNDLKRIAKHFRFGSQEDAHEFLRYTVDAMQKSCLPGNKLDRQTQATT
LIHQIFGGYLRSRVKCLNCKAVSDTFDPYLDVTLDIKTAPTITKAMEQFVKPEQLDGENA
YKCTKCKKMVPASKRFTIHRSSNVLTISLKRFANYNGGKIAKDVRYAEYLDMRPYMSQPH
GDPLIYNLYGVLVHSGFSCHAGHYYCYVKGSSGQWYQMNDSSVSVSDIRSVLNQQAYVLF
YIRCHDVKNGGELSPVIRTPPRPAMSVRGLTVNRPAVPSNGPTRLIKVGPQVNGRAYHSG
FRYGSSAGSSSSTSTKTGAGLSSASSSSSSASSSTSTSTSTCTSHAPSRPTEIADPDKRQ
KLSFLIGQGKSVRPGLTQPGSSSSSGVSHTQPSSSAAASSSFSTLHSTSDPSSSGSKLNG
APRSSSSSSSSSSSSSSSATAASAFLVPYGQESSEESDQESNSGLRHNGQTEAHANAKPA
NGKRNGHSMSPPPKRHASDPMGSQAKTNGSSNGYANDHNDNGHNDAKPSQNGHHKVNGVK
VNGNGHVTSPNSFNGQDAEFRANPGLSKPSKNPDAPAGMSMPPVGKNGHQSPPHTSGILR
DSGEGNAFAQLGGPSVLSPACEAVAETQEKLPEVHVDSLLMAKEQAPRAFEVKHPPQNGS
GDCPSVSQVKAPPIEPVHVNGLNGRPEAGDSETAKHASRDERDEDGDRHTRPSAYLSKDR
ERDRERDSHRRHYDHNGGGERGKERYGHRGDREPRPPRPRSGSRERYHRDSDRYWDRHRS
SYHHRDHYHHRHRSKSDRDRRPVVGEYNHHRGSGRWEDGSSRWRWGGEEGRGRLHTSEEE
EAELSSRAKQPEPPAYNPSASSGHTDRKRSLEDDHSEERQVKKHKKSKKKKKNKDKHRGS
DLDSPERTSDGTSVKHKKKKKKKKRRHEDEQNHRSSGGEERPNRKRRSHERDPSPQDSKR
ARLDNHSAHTPSTQHRQLNGHIGNGYSSMSSQEGDSTQGISKDAKCMMASGRLLSPLCAG
GNGERRRASKMSAFDVNGHVV
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttgacaaaccattagagaaatctgacctcgagtcagtgcgggggaatcgg
tccggcgcgatggcctccttctcctccggggacatggacgggagctgctccagctgggga
gggagctcctccacctccgacctacccagggccaagaccccctgcatgggccccacccct
ggagctaccctgtacagcgctgccgctacaaccacaaccaccaccacctcctccaccacc
ccccttaccactgagcggcccaaggagcaggtgatgacgaccagtggggacggcatcgcc
ctccctcagaaggtgctgttcccggctgagcgtctgaacctcaagtggcaccagatgcac
cgcatcggagctggcctccagaacctgggcaacacctgcttcctcaactctgccctgcag
tgtctcacctacaccgctcccctggccaactacatgatgtcccgcgagcattccaagaca
tgtcatgagcctgggttctgcatgatgtgcaccatgcagaatcacgtcacccaggtgttt
gccaactcaggcaacgtcatcaagcccattggtgttctcaatgacctgaaacggattgct
aagcattttcgctttgggagccaagaggatgctcatgagttcttgcggtacaccgtggat
gctatgcaaaagtcctgcctgcctggaaataaattggaccggcagacgcaggcgaccact
ctcatccatcagatctttggagggtatttgaggtctagggtaaaatgcctaaactgcaaa
gcagtgtctgatacctttgacccatacctagatgttactttggacattaagactgcccct
accatcactaaggctatggagcagtttgtcaagccagagcaacttgatggagagaacgcc
tacaagtgtaccaaatgtaagaaaatggttccagcctccaagagattcaccatccatcgc
agctctaatgtgctgaccatttcactcaagcgatttgccaactacaatggcggcaagatc
gcaaaggacgtgaggtatgcggagtaccttgacatgcgtccctacatgtcccagccccat
ggggatccgctgatctacaatctgtacggcgtgctcgtccactccggcttcagctgccac
gccggccactactactgctatgtgaagggtagtagcggtcagtggtaccagatgaacgac
tcctctgtgtctgtcagcgacatccgttcggttcttaaccagcaggcctacgtcctcttc
tacatcaggtgtcatgatgtcaagaatggaggggagttgtcgcccgtgatccgcacccct
cccaggcccgctatgagcgttcggggcttaacggttaaccggcctgccgtaccctccaac
gggcctacacgcctgatcaaggttggccctcaggtcaatgggcgggcgtaccacagtggc
ttccgatacggcagtagcgccggcagcagcagcagcacttcgaccaaaactggcgccggc
ctgtcctccgcctcgtcatcttcctcatctgcgtcatcctccacctccacctcaacctcc
acctgcacctcccacgcacccagcaggcccacggagatcgccgacccggacaaaaggcag
aaattgtccttcctcattggccagggcaagagcgtccgcccaggcctgacccagccgggt
tcctcgtcctcctctggggtctcccacactcagccctcctctagcgctgctgcctcctct
tcattctccaccttgcactctacctcagacccctcctcctctggctccaagctcaacggc
gccccccgcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagtgccacc
gccgcctctgccttcctggtgccctacggtcaggaatcctcagaggagtcggaccaggag
agcaatagcgggctcaggcacaacggtcagacagaggctcacgccaatgccaagcccgcc
aacgggaagaggaacggacatagcatgtcgccgccccctaaaaggcacgctagcgacccg
atgggcagccaagccaagaccaacggctcctccaatggctatgctaacgaccacaatgac
aacggccacaatgatgccaagcccagccagaatggccaccacaaagtcaacggcgtgaag
gttaacgggaatggtcatgtgacctctcccaactcctttaacggccaggatgctgagttc
agggccaatccaggcctcagcaagcccagcaaaaaccctgatgcccctgctggcatgagt
atgcctcctgtcggcaagaatggtcatcagtccccacctcacacctctggtatcttgcgg
gactcgggcgagggtaacgccttcgcccagctgggcggcccctctgtcctatcaccggcc
tgtgaggctgttgccgagacgcaggagaagctgcccgaggtgcatgtggacagcctcctg
atggccaaggagcaggcgccgcgagcctttgaggtaaagcacccaccccagaacggttca
ggagactgtccctcggtctcgcaagtgaaggctccccccattgagccggtgcatgtgaac
gggctcaacgggcgaccagaggcgggtgactccgagacggctaagcatgccagccgggat
gaacgggacgaggacggggaccgacacactcgcccgtccgcctacctctccaaggaccgc
gagagagaccgggagcgcgactcgcaccgccggcactatgaccacaacggcgggggcgag
agggggaaggaacgctatggtcaccgtggcgacagggagccccgccctccccgcccgcgc
tctggcagccgagaacgctaccaccgtgactctgaccgctactgggaccgccacaggtcg
tcctaccaccaccgcgaccactaccaccaccgtcacagatccaaaagtgaccgcgaccgg
aggcctgtcgtcggggagtataaccaccaccgaggctccgggcgctgggaggacggctcc
agccgctggcgttggggaggtgaggaggggcgcgggcggctgcacaccagcgaggaggag
gaggcggagctctccagcagggccaagcagccggagccccccgcctacaacccctctgcc
tccagcgggcacacagacaggaaacgcagcctggaggacgaccattcagaggagcggcag
gtcaagaaacacaagaagtccaaaaagaaaaagaagaacaaggacaagcatagaggttca
gatctggactcccctgagcggaccagcgacggcacctcagtgaaacacaagaaaaagaag
aagaaaaagaagaggaggcacgaggacgagcagaaccacaggagttccgggggcgaggag
cgacccaaccgcaagcgccgcagccacgagcgagatccgtcgccgcaggactccaagcgc
gcccgcctcgacaaccactctgcccacacgcccagcacccagcaccgtcagctgaacggc
cacataggcaatggctactcctctatgtcttcccaggaaggcgatagcacccagggaatc
tccaaagatgcgaaatgcatgatggcatctggtcgactgctgagtccactgtgtgcggga
ggaaatggggagaggaggagagcttcaaagatgtctgccttcgatgtgaatggacatgtg
gtgtag
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integrated database retrieval system
