Clupea harengus (Atlantic herring): 105910549
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Entry
105910549 CDS
T09045
Symbol
rad23aa
Name
(RefSeq) RAD23 homolog A, nucleotide excision repair protein a
KO
K10839
UV excision repair protein RAD23
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03420
Nucleotide excision repair
char04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
105910549 (rad23aa)
09124 Replication and repair
03420 Nucleotide excision repair
105910549 (rad23aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
char03051
]
105910549 (rad23aa)
03400 DNA repair and recombination proteins [BR:
char03400
]
105910549 (rad23aa)
Proteasome [BR:
char03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
105910549 (rad23aa)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
105910549 (rad23aa)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Crinkler
Rad60-SLD_2
Dsc3_N
DUF7970
DUF1421
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
105910549
NCBI-ProteinID:
XP_031418354
UniProt:
A0A6P8F0U3
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Position
24:complement(12387700..12396473)
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AA seq
385 aa
AA seq
DB search
MMQITLKTLQQHTFQIQINEELTVKVLKERIEEEKGKDNFPIAGLKLIYAGKILQDDTPL
KEYKIDEKNFVVVMVSKAKAPPAPSAPPEPPKSETPAAATATATATPPPPRPRQAALPIP
PDEDSSPAQSQPPPPPAQPQPQPQPQQQSAPASRGGSAPSTEGFGDMASSALVTGPAYEA
MVSEIMSMGYERDRVEAALRASFNNPDRAVEYLLTGIPTTVPVQETNPPSANLSSDTPTT
EGENPLEFLRSQAQFQTMRQVIQQNPSLLPALLQQLGQDNPQLLQQISRHQEQFIQMLNE
PQGEMGEMGEGPDTADPSEPGDLGAMVDDMTSGNYIQVTAQEKEAIERLKALGFPEALVV
QAYFACEKNENLAANFLLNQNFDDD
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagatcaccttaaagacgctgcagcaacacactttccaaattcaaatcaatgaa
gagctaacggttaaggtactcaaggagcgaatcgaagaggagaagggcaaagacaacttt
cccatcgctggactgaaactcatttatgcaggcaaaatcttacaagatgacacccccctc
aaagaatacaagattgacgagaagaacttcgtggtggtgatggtgtccaaggccaaggct
cctcctgctccctcggccccccccgaaccccccaagagtgagacgcctgcggcggcgacg
gccacggccacggctacccctccccctcctcggccgcgccaagcagccctccccatcccc
cccgatgaggactccagccctgcccagtctcagccgccgccaccgccggcccagccccag
ccccagccccagccccagcagcagagcgccccggcctcgcgtggtgggtcagccccctca
acagaaggctttggtgatatggcatcatcagcactagtgacgggccctgcgtacgaggcg
atggtgtctgagatcatgtcgatgggctacgagcgggaccgcgtggaggctgcgctgagg
gccagcttcaacaacccggaccgcgctgtggagtacctactcactgggattcccactaca
gtcccagtgcaagagaccaatccaccctcggccaacctttcttcagacacacccacgaca
gagggggagaaccccctggagttcctgcgttctcaggctcagttccagaccatgaggcag
gtgatccagcagaacccctccctgctgcctgctctcctccagcagctgggtcaggataac
ccacagctactgcagcaaattagccggcaccaggagcagttcatccagatgttgaacgag
ccgcagggggagatgggggagatgggggaggggccagacacggccgacccgtcggagcca
ggcgacctgggcgccatggtggacgacatgacctcggggaactacatccaggtcacggcc
caggagaaagaggccatcgagaggttaaaagctttgggctttcctgaagccctggtggtg
caggcttacttcgcttgtgagaagaacgagaacctcgccgccaacttcctgctcaaccag
aactttgacgatgactga
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