Clupea harengus (Atlantic herring): 105910651
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Entry
105910651 CDS
T09045
Symbol
rfx1a
Name
(RefSeq) MHC class II regulatory factor RFX1a
KO
K09173
regulatory factor X 1/2/3
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105910651 (rfx1a)
Transcription factors [BR:
char03000
]
Eukaryotic type
Other basic domains
RF-X
105910651 (rfx1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX1_trans_act
RFX_DNA_binding
ThermoDBP-RP_arch
Motif
Other DBs
NCBI-GeneID:
105910651
NCBI-ProteinID:
XP_031417158
Ensembl:
ENSCHAG00000006764
UniProt:
A0A6P8EM25
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Position
23:24389303..24416964
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AA seq
919 aa
AA seq
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MATPAYVGELPQSSQPPGGSVSVVAGQPDAAAAATAPPAQFLAEIPTTIITGTTTPPVDQ
TTPPASQAPPTHSQNSPVASTPAPPTQTQYVATEIQSSPTQTNAQSTPQYIVVTVTEGSL
HSSDSVSDSSPPPAVVQTGVPTQVVQQVQAGQQTSVLQANSQAAKTEQGTQLTVTSLQPV
HITQEQLQQVPVQHVYTNQVQYVEPGDPTYTTSTIRSSSFTYSEAPLYTQTSAGTSYYET
TPTSGSPSTPATPLTVAVTTGAAGSVSMFVAGAGQIVANPVVTSGAGGGAASVVATGSAG
TANGTGEGGASNGGGGSYVIQGGYMLGGGANSNSSGGASSSSSSGSHGYTHTHSHTPTAR
ASPTTVSVCEGEDSSVPSADKKVQWLLDNYETAEGVSLPRSTLYCHYLLHCQDQKLEPVN
AASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSSLLRLMEDQQHLAMRQQPFSQ
KQRMKAVQKVEGMTNGTSSSSSGSAQQQGSGGLSDISAQVQQYQQFLDASRVLPEFPELD
LQGKALPEGIEMEHIKSFQLLYREHCEAILDVMVNLQFTLVETLWKTFWRFSENQTTDTG
TLAVHDESERRLPKSCLVLLCKYDPVVRWSRDCDNTLYQGLVEILIPDVLRPIPSALTQA
IRNFAKSLDSWLTNAMMNVPEEMVRVKVTCASAFAQTLRRYTSLNHLAQAARAVLQNTAQ
INQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKLTLQQQNSLEQWAAWLDGVVS
QILKPYVSTAAFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLI
EHRVAQAKGETPIAVMGEFASLGHSLNPLDPDKEEEEEEEEESDDECQELSLPSDVTLGT
DSLEPPAKLARTDQRVLLN
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggccacgccagcctacgtgggggagctgccgcagtcctcccagccaccggggggcagt
gtgagcgtggtggcaggccagccggacgccgccgcagcagccaccgctccgccggcgcag
ttcctggccgagatccccaccaccatcatcacagggaccaccacgccccctgttgaccag
accacgccccctgcatctcaggctcctcccacacattcccagaactccccggtggcctcc
acgccggccccgcccacccagacacagtacgttgccacggagatccagagctcgcccacc
cagaccaacgcccagagcacgccgcagtacatcgtcgtcacggtgaccgaaggttctctc
cactccagtgactctgtgtccgactccagtcctcctcctgctgtggtccagacaggggtt
cccacacaggtggtgcagcaggtacaggccggccagcagacgtcagtgttgcaggccaat
tcacaggctgcaaagacggagcagggtacccagctgactgttaccagtctgcagcctgtc
cacatcacacaagagcagcttcagcaggtgccagtccagcatgtgtacactaaccaggtg
cagtatgtggagccaggagacccgacctacaccaccagcaccattcgctccagcagcttc
acctactccgaggctcctctctacactcagacctccgccggcacctcctattacgagacc
acgcccacctccggctccccctccaccccggccacgcctctcaccgttgccgtgacgacc
ggcgccgcgggctccgtctccatgttcgtggcaggggcggggcagatcgtagccaatccc
gtcgtgacatcgggagcagggggaggggccgcatcggtggttgccacggggtctgccggc
acagccaatggcacgggggaaggcggggcttctaacgggggaggcgggagctatgtgatc
cagggcgggtacatgctaggaggcggagctaacagcaacagcagcggcggcgcgagcagc
agcagcagcagcggtagtcatggctacacacacacacactcacacacccccacggcgcga
gcctcccccaccaccgtgagcgtctgtgagggggaggacagtagcgtgccctcggcggac
aagaaggtgcagtggctattagataactacgagacagctgaaggtgtgagtctcccccgc
tccactctctactgccactacctgctgcactgccaggaccagaagctggagcccgtcaac
gccgcctccttcggcaaactcatacgatcagtcttcatggggctccgcacacgccgcctg
ggcacacggggtaactctaagtatcattactacggtctgaggatcaaagccagctcgtct
ctactcaggcttatggaggaccagcagcacctagccatgaggcagcaacccttctcccag
aaacagaggatgaaggcagtgcagaaggtggaggggatgaccaatgggacgtcctcttcc
agctcaggctccgcccagcagcaggggagtggtggcctgtctgacatcagcgctcaggtg
cagcagtaccagcagttcctagacgcgtcacgtgtgctcccagagttccctgagctggac
ctgcagggtaaggcgctcccagagggcatcgagatggaacacatcaagagctttcagctg
ctgtaccgggaacactgcgaggctatcctggatgtgatggtgaacctgcagttcactctt
gtggagactctttggaagaccttctggaggttcagtgagaaccagaccacagatacagga
acactggctgtccatgatgagtcggagcgacgcctgcccaagtcctgtctggtgctgttg
tgtaagtacgacccggtcgtccgctggagtcgagactgcgacaacacactgtaccagggc
ctggtggagatcctcataccggatgtgctgcgacccatacccagtgccttaacccaagcc
atccgtaactttgccaagagcctggacagctggttgaccaacgccatgatgaacgttcca
gaggagatggtccgcgtcaaggtgacgtgtgctagtgcgtttgcgcagacgttgcgccgg
tacacgtctctgaaccatctggcgcaggcggcacgagccgttctccagaacaccgcccag
atcaaccagatgctctccgacctcaaccgcgtggacttcgccaacgtgcaggagcaggcc
tcgtgggtgtgtcggtgtgaggaccgtgtggtccagcgtctcgagcaggacttcaagctc
acgctgcagcagcagaactctctagaacaatgggccgcctggctggacggcgtcgtctcc
cagatcctaaagccctacgtgtccacggccgccttccccaaagcagccaaactcttcctg
ctcaagtggtccttctacagttctatggtgatcagggacctgactctgcgcagtgctgct
agtttcggctcgttccacctgatccgactcctgtacgacgagtatatgtactacctgatc
gaacacagggtcgcccaggccaaaggagaaacacccatcgctgtcatgggagagtttgcc
agtcttggccacagtttgaacccactggacccagacaaagaagaggaagaggaggaggaa
gaggagagtgatgatgagtgccaggagctttcgctgccttctgacgtaactcttggcacc
gactccttggagccacccgccaagctggcccgcacggatcagagagtcctgttgaattaa
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