Clupea harengus (Atlantic herring): 105910796
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Entry
105910796 CDS
T09045
Symbol
tprb
Name
(RefSeq) translocated promoter region b, nuclear basket protein isoform X3
KO
K09291
nucleoprotein TPR
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105910796 (tprb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105910796 (tprb)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
105910796 (tprb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
105910796
NCBI-ProteinID:
XP_012694986
Ensembl:
ENSCHAG00000010540
UniProt:
A0A6P3WCB4
LinkDB
All DBs
Position
10:complement(10790294..10813986)
Genome browser
AA seq
2353 aa
AA seq
DB search
MAAVLQQVLERTELSRLPKTVQNKLEKYISDQQSEIDSLKAQHEQFRVDSEQQYFEVEKR
FADSQDRFVAQTQELRRLKEDFAKNEDELRCVREKRKESEDSQTKLESQQNQLQKAKDEL
EAEKRELVRTLERRSQEVEHQSEDVKRLSNKLVEVSTSKLELQMKLDELESSEVSIKYKE
KRMEQERELLQNQLDWMNSELKTKSEELMSLSRQRGNEVLELKCSVENKQDEITRLQDQI
TNLKTLNENNQKRAEDLIHKLKEVKEMQGTSEEKFRNELNANIKLSNLYKGAASDSDSKG
EELRGAVEELQKLLKEAGEANKAFEVRLEEMDGERAKTEEKLKERIAELEKELENANELL
SDGKRRGSAGAASVMTEEPLTTMSPTAAAISKFRPGMKLTELYSAYIEAQEQLQLERLDN
RRVNKYLDDIVQEVEAKAPILKRQRDEHERMQKSVASLSTKLEQAVKEVHRLQKEADEAN
KRASVLDRDNKRCDQQLSDLSQQVRVLLIELEEARGNHVARDDEADSSADVSSTSEVISQ
HLVTFRSVEELQQQNQRLLVALRDLCETQERDEMETTSKRRCELEASLEKAQSELEQLKE
QRTMQMQLAESIVRQRDMYRMLLAQATGVSLPQPGAAGDEVSLTSTPRRSPATTPTTATP
TVITLPESTEAVEAKAALKQLQEVFGAYKKERVESERAVEKTNERLQEQVSDLRSQNAKI
STQLEFASKRYEMLQDNVEGYRKEISSLREKGQKMGAVAQKHEQAVNTLTQELCTANEKI
NMAESRLECLRKERDLLKLTETRLTQEKESTLTQQRGQSLLLTNLQAIQTTLERSETETR
QHLNNQIEKQEREIVQLQKRLEKEVEQRHMLSRNHDVQLLEAKRQQEVQQAQHQRTREQL
TAAQLELSGLRTQQNSRESLPSPKAKDSATGVPSGIQVEMEELRGRLRQAATELEDLKER
LQTNAASREQYRTMCLSLEESLEKEKEVTAQAQASVEARLKAAEEERKRLEEKLQEAERV
NKSMKGDKDKAVAAIEQQLNELKKTINSTKTDLEKAQERATTATSQEQQAIQDRKEQARL
AAEAQSKYEQEVLLHAADVQALLTTKAQAQQANAVRHQLEESAHRASAQLLEARVSWEEQ
ERMLKEEASKEASRSEDLQKQNSLLHDQIQSLSSKMAATAQQAGNQSTFNLTLSEDKSQE
QVLEILKFVRKEKEIAETRYEIAQAESLRQRLRVQQLEHELKDLQESLNTEREKMQVTAR
SLAQHEVLMKKTETMNVLVESNKLLREEKDRLQMELEQAHSKVSKQEQSIMPIQESNAEL
SEKSGMLQAEKKLLEEDIKRWKARTQHLLSQQKDVDPEEYKRLHTERESHLKRIQQLNEE
NSKLKADATRSSGAVTSLQSQLTALRENLGKLTAERDGAKRDLEAKNHDLQERLKTITQV
KKIGRRYKTQYEELKEEHDKMVAAAAATPAPDPEAQQALTQELQTVKESLTQSQARSTKL
EAQLETLNKTAGERETEARTAQEELTRLRQEVQDKTAQEEALRHQMTEKEERTKKAIMGA
RQKIRQVIGEKEALQKETEELRQQREELEVRVSALRSQYEGRLSRQERELRELRDQHDRH
TEPREEPAEPGPSKVPEQQRTTEQRPKNLKPTQQAAERGSASSSETPTANIKPTPVVATP
SKPAPSQGNKPTPRASIRPMVTPAPVPTPTPTATVMPTTQETQEAQPSSEGPVEHMYGST
SGTVRSTSPNVQSSSLGSSMLAPQSQATAFVQPTQTVAPSEPANPEPAPAPVMMEATPSS
QVERPSTSTAVFGTVSATQGSSMNKRVREEEQEGTSADTETPEEPSKRARLVQRVGPEEE
VMEDSTEAESVVPGESQEADVSQELEEYPVLAEVDDEAGGSQSVPVETSQEGEAPQQSVI
VIVSDSESEAEQEGESEEEVEEEEEEEEQDYDEEEEEEEEEDEDDGGMGEEGEESNEGSG
SGEGNEAYEGDEQEGAEVTDPGTETEESLGATDSTQQRLADSQTFSVEPANANVESHTVD
PPRETPISCSTPRLPQSPRRPPHPLPPRLNILPPPGPDLVPPSLVQRIPVRFHSSGRSMP
LTPGANSGTMMSETQMNFDNDDRIVPSTPILVVPNRSDSFTEPLQSPQVATVPRFRFGTL
EDMNQSTSSHSDLGQLASQGGLGMYESPMFLASQEEESGGRSVPTTPLQVAAPVTVFSET
VSIDTFSMETPEPASQSVPLVTTSTPSLGAPGSGAGGDDRDEVLMEPENDGMSGDVGQEH
VSQTETEEPGQPSDEASLPSTSQEPSSSSGDTSSTQQPRGGRGASGRQLQRWTHTPGSGP
MKRGMGFRDRSMK
NT seq
7062 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagtgctgcagcaggtgcttgaacggacggagttgtccagacttccaaagacc
gttcaaaataagttggagaaatacatttcagaccagcaaagtgagattgacagtctgaaa
gcgcaacacgaacagttccgcgtggatagtgaacaacagtactttgaggtcgaaaagcgg
tttgcggacagtcaggatcggttcgttgcgcagacgcaagaactcaggaggctaaaagag
gactttgctaagaacgaagacgagctgagatgcgtgcgcgaaaagagaaaagaatccgaa
gattctcagacgaaattggaatcccaacagaaccagctccaaaaagccaaggatgagctg
gaggcagagaagagggaacttgtccgcaccctggagaggaggtctcaggaggtggaacac
cagagtgaggatgtgaagcgattgagtaacaagctggtggaggtgagcacatccaagctg
gaactacagatgaagctggatgagctagagtcctctgaagtctctattaagtacaaggag
aagcgtatggagcaagagagggagctgctgcagaatcagttggactggatgaactctgag
ctgaagaccaagagcgaggagctgatgagcctctcccgccaaagggggaatgaggtcctg
gagctcaagtgcagcgtggagaacaagcaggatgagatcaccagacttcaagaccaaata
accaatctgaaaacattaaatgaaaacaaccagaagagagctgaagatctgatccacaaa
ctgaaggaggtcaaagagatgcaaggaacatcagaggagaaattccgtaatgagctgaat
gcaaacatcaaactctccaacctttataagggcgctgcttcagactctgactccaagggt
gaggagctgagaggtgctgtggaggagctgcagaaactcctcaaagaggcaggagaggct
aataaagcttttgaggtgcgtctggaggagatggatggagagagggcaaagacggaggaa
aagctgaaagagagaattgcggagctggagaaggagttggagaacgccaacgagctcctt
tccgacggcaaacgcagagggagtgcaggagctgcatcagttatgaccgaggagccgctg
accaccatgtcccccactgctgcagccatcagcaaattcagacctgggatgaaacttact
gagctgtacagcgcgtacatcgaggctcaggagcagctgcagctggagcggctggacaac
cggcgggtgaataagtacctggatgacatcgtgcaggaggtggaggccaaggcgcccatc
ctcaagaggcagcgtgacgagcacgagcgcatgcagaagtctgtggccagcctctccacc
aagctggagcaggccgtcaaggaagtgcatcgtctgcagaaggaggctgacgaggccaac
aagcgggcgtctgtgctagatagagacaacaagcgttgtgaccagcagctctccgacctc
tcacaacaggtgcgcgtgctgctgattgagctggaagaggcgcgtggaaaccatgtggcg
cgggacgacgaggcggacagctctgctgacgtaagcagtacctcggaggtcatctcccag
cacctggtgaccttccgcagtgtggaggagctgcagcagcagaaccagcgccttttggta
gccctgcgcgacctttgcgagacccaggagcgcgatgagatggagaccacctccaagagg
cgctgtgagctggaagccagcctggagaaggcccagagtgagctggagcagctgaaggag
cagaggaccatgcagatgcagctggctgagtctatagtgcgccagagagacatgtaccgc
atgcttctggcacaggccaccggtgtctcgctacctcagccaggagctgcgggcgatgag
gtgtctttgacttccacgccacgccgctctccagcgaccacgcccaccacagctacaccc
actgttatcactctgcccgagtcaacagaagcggtggaggccaaagctgctctcaaacag
ctgcaggaggtgttcggggcttataagaaggagcgcgtggagagtgagcgtgcagttgag
aagacgaatgagaggctgcaggagcaggtctctgacctgcgctcacagaacgccaagatc
tccacccagctggagttcgcctccaaacggtatgagatgctgcaggataacgtggagggt
tacaggaaggagatctcctcattgagggagaaagggcagaagatgggagccgtcgcccag
aaacatgagcaggctgtgaacaccctcacccaggaactgtgcaccgccaacgagaaaatc
aacatggctgagtcacgcctggagtgtctgcgcaaggagagagacctgctgaagctgact
gagacgcggctgacccaggagaaggagtctaccctcacccagcagcgaggacagagcctg
ctgctcaccaacctgcaggccatccagaccactctggagcgctcggagacggagactcga
cagcacctgaacaaccagattgagaagcaggagcgggagatcgttcagctgcagaagagg
ctggagaaggaggtggagcagaggcacatgctcagccgcaaccacgacgtgcagctgctg
gaggccaagaggcagcaggaggtgcagcaggctcagcaccagcgcaccagggagcagctg
acggccgcccagctggagctctccggcctccgcacgcagcagaactctagagagagtctg
ccctcacccaaggccaaggactccgccactggagtgccgtcaggcattcaggtggagatg
gaggagctgcgtggccggctgcgacaggctgcgacggagctggaagacttgaaggagagg
ctgcagacgaacgccgccagcagggagcagtaccgcaccatgtgcctgagcctggaggag
tctctagagaaggagaaggaggtgactgctcaggcccaggcatctgtggaggcgcgtctg
aaggcggctgaggaggagcgtaagcggctggaggagaagcttcaggaggctgagcgcgtc
aataagagcatgaaaggggacaaggacaaggccgtcgctgccatcgaacagcagttgaat
gagctgaagaagaccataaacagtacgaagactgatctggagaaggcacaggaaagggca
accaccgctacttctcaggaacagcaggccattcaagaccgcaaggagcaggcacgtctg
gcggcggaggcgcagtcgaagtacgagcaggaggtgctgctgcacgcagccgacgtgcag
gccttgctgacgaccaaggcccaggcccagcaggccaacgctgtcaggcatcagctggag
gagagcgcccacagggccagcgcccagctgctggaggcccgagtctcctgggaggagcag
gagcgcatgctcaaggaggaggcgtctaaggaggcgtcacgctcggaggacctgcagaag
cagaactccctcctgcatgaccagatccagagcctaagcagcaagatggctgccacggcc
cagcaggccggcaaccagagcaccttcaacctcaccctcagcgaggacaagtcccaggag
caagtgctggagatcctcaagttcgtgcgcaaggagaaggagattgcggagacacgttat
gagatcgcccaggcagagagccttcggcagcgcctgcgcgtgcagcagctggagcacgag
ctgaaggatctgcaggagagcctcaacaccgagagggagaagatgcaggtgactgcccgt
tcactggcgcagcacgaggtgctgatgaaaaagactgagaccatgaacgtgctagtggag
agcaacaagctcctaagggaggagaaggaccgactccagatggagctggagcaggcgcat
agcaaggtgagcaagcaggagcaatccatcatgcccatccaggagtccaacgcagagctg
agtgagaagagcgggatgctgcaggccgaaaagaagctcctagaggaggacatcaaacgc
tggaaagcacgcacacagcatctattgagccagcagaaggatgtcgacccagaggagtac
aagcgtctgcacaccgagagagaatctcacctcaaacgcatccagcagctcaatgaggag
aacagcaagctcaaggcagatgccaccaggagcagtggcgcggtgacgtccctgcagtcg
cagctgacggcgctgcgggagaacctgggcaagctgacggcggagcgggacggggccaag
cgcgacctggaggccaagaaccacgacctgcaggagaggctgaagaccatcacgcaggtc
aagaagatcggtcgccgctacaagacccagtatgaggagctcaaggaggagcatgacaag
atggtggcggctgcagcagcgaccccagctcccgaccctgaggcccagcaggccttgacc
caggagctgcagacagtcaaagagtctctcacccagagccaggctcgcagcaccaagctg
gaggcccagctagagaccctcaacaagacggcgggcgagcgggagaccgaggcacgtaca
gcacaggaagagctgactcgcctgaggcaggaggtgcaggataagactgcccaggaggag
gcgctgcgccaccagatgaccgagaaggaggagcgcaccaaaaaggccataatgggagcc
cgccagaagatccggcaggttattggagagaaggaggctctacagaaggagacggaggag
ctgcgccagcaacgtgaggagctggaggtgcgggtgagcgcgctccgctcccagtatgag
ggccgtctgtcccggcaggagcgggagctgcgggagctgcgtgaccagcacgaccgccac
acagagcccagggaggagcccgcagaacccgggcccagcaaggtaccggagcagcagagg
accactgagcagagacccaaaaacctgaagcccacccagcaggcagcagagcgtggaagc
gccagctcctcagagacccccacggccaacatcaagcccacccctgtggtggccacgccc
agcaagcctgcacccagtcagggcaacaagcccaccccccgcgccagcatccgaccaatg
gtcacccccgcgcccgtgcccacgcccactcccaccgccacagtcatgcccaccacccag
gagacacaggaggcccagccgtcgagcgagggccccgtggagcacatgtacggcagcacc
agcggcacggtgcgttccaccagccccaacgtgcagtcctcctctctgggctcctccatg
ctggccccccagagccaggccactgccttcgtccagcccacccagaccgtggcccccagc
gagccggccaatccggagcccgcgcctgctcccgtcatgatggaggccacacccagctcc
caggtggagagaccctccacctccacggcagtgtttgggacagtgtcagccacacagggt
tcatccatgaacaagcgcgtgcgagaggaggagcaagaggggacgagcgcagacacagag
accccagaggagcccagcaagagagcccgccttgtccagagagtggggcctgaggaggag
gtgatggaggacagcacagaggctgagagtgtggttcctggtgagagtcaggaggcagat
gtctcacaggagctggaagagtacccggtgctggccgaggtagacgacgaggcgggaggc
tcccagtcggtccccgtagagacctcgcaggagggcgaagccccgcagcagagtgtcatc
gtcatcgtcagcgactctgagagcgaggccgagcaggagggcgagagtgaggaagaggtg
gaggaggaagaggaggaggaggagcaggactatgacgaagaagaggaggaagaggaggag
gaagatgaagatgacggtggcatgggtgaggagggagaggagagcaacgagggaagtggc
agcggagagggcaacgaggcgtatgagggcgacgagcaggagggggcggaggtgaccgac
cccggcacagagacggaggagagtctgggagcaacggactccacccagcaacgcctcgca
gattcccagacattcagtgtggaaccagctaatgctaatgtggaaagtcatacggtggac
ccgcccagagagacaccaatcagctgctcgacacctcgtcttccacagtcaccacggcga
ccaccgcatcctctgccaccgcgcctgaacatcctccctcctcccggccctgatctggtt
cccccctctctggtacagcgcattccagtccgattccattcttcagggcgctccatgccg
ctcactccaggagccaacagtggcaccatgatgtctgaaactcaaatgaactttgacaat
gatgaccgcatcgtccccagcacccctattctggtggtccccaaccgctctgacagtttc
actgagccgctgcaatcccctcaggtggctactgtgccccggttccgcttcggcacgtta
gaagacatgaaccagtccacatcgtcgcactctgacctgggccagctggcctctcaagga
ggtctgggcatgtatgagagtccgatgttcctggcgtcccaggaagaagaatccggtgga
cgcagtgtccccaccacacctttacaggtggcagctccagtgactgttttctctgagact
gtttctatcgacaccttctctatggagaccccagagccagcctcccagtctgttcccctg
gtaaccacatccacacctagcctaggcgccccagggtctggtgctggaggggacgacaga
gacgaggtcctcatggagccagagaatgatggaatgagtggggatgtaggccaggagcat
gtgtcccagactgaaacagaggaacctggacagccatctgatgaggccagcctcccctca
accagtcaggagccttcctctagctccggagacactagtagcactcagcaacccagagga
ggcagaggagcctctggcagacagctccagcgctggacacacacgcctggcagtggcccc
atgaagagaggcatgggattccgagatcgctccatgaagtaa
DBGET
integrated database retrieval system
