Clupea harengus (Atlantic herring): 105910816
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Entry
105910816 CDS
T09045
Symbol
ptbp2b
Name
(RefSeq) polypyrimidine tract-binding protein 2b isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105910816 (ptbp2b)
Spliceosome [BR:
char03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
105910816 (ptbp2b)
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
GlcNAc-1_reg
RRM_Nup35
Herpes_capsid
Motif
Other DBs
NCBI-GeneID:
105910816
NCBI-ProteinID:
XP_012695018
Ensembl:
ENSCHAG00000023680
UniProt:
A0A6P3WCC9
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Position
10:9311057..9322009
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AA seq
530 aa
AA seq
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MDGDVAVGVKRGSDELLSGSHYNSPNSSVTSNGSDSKKLRVEENPPSRVIHIRKLPNEVS
ETEVIALGLPFGKVTNILMLKGKNQAFLEMGTEEAAITMVNYYTTVTPQVRNVPVFIQYS
NHKELKTDSTLNQRAQAVLQAVSAVQDGSSPNSESGGSENVLTPAPSPVLRIIIDNMFYP
VTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQYSEPVNAQQSKLSLDGQNIYNSCCTLR
IDYSKLVNLNVKYNNDKSRDYTRPELPAGDGQDSSMNKDSTSLLGSPTAAPFSSGGGFSS
SLCLAQGGGAISPLSAAAAAAAAAGRVALAGHSGSSGVLLVSNLNEEMVTPQSLFTLFGV
YGDVQRVKILFNKKDSALIQLSDGNQSQLAMSHLNGQKMYGKIIRVTLSKHQTVQLPRDG
LDDQGLTKDFANSPLHRFKKPGSKNFQNIFPPSATMHLSNIPEDVTEEDLRLLFSNAGGT
VKAFKFFQDRKMALLQMGTVEEAIQVLIDLHNYDMGAGHRLRVSFSKSTI
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggatggtgatgtcgcggttggtgtgaagaggggatcagatgagttgctctcaggtagc
cactacaacagtcccaactcctctgttacttcgaatggaagtgacagtaagaagctgagg
gtagaggagaacccaccctcccgggtcatccatatccgaaagcttccaaacgaggtgtct
gagacggaggtcattgctctgggcctgccctttggaaaggtcacaaacatccttatgctg
aagggtaaaaaccaggctttcctagaaatgggcacagaggaagcggccatcaccatggtg
aactattacacgacagtgacaccccaagtgcgaaacgtccctgttttcatccagtactcc
aaccacaaagaactgaagacagacagcactcttaatcagcgagctcaggcagtgctgcag
gcggtgtcagcagtgcaggatggcagctcccctaactccgagtccggaggcagtgagaac
gtgctgaccccggcccctagccccgtgctcaggatcatcatcgacaacatgttctacccc
gtcacactggacgtgctacagcagatattctccaagtttggtacggtcatgaagatcatc
accttcactaaaaacaaccagttccaagccctgctccaatacagcgagccagtcaacgct
cagcaatccaaactgtccctggacggtcagaacatctacaactcctgctgcacgctgcgc
atcgactactccaagctggtgaacttgaacgtcaagtacaacaacgacaagagccgagac
tacacgcgcccagagctgccagccggagatggccaggactccagcatgaacaaggactcc
acctctctcctcggttctccaactgcagctcccttctctagtggtggaggcttttcgtct
tctctttgccttgcacagggcggaggagccatctccccgctgagcgcggcggcggcggca
gcggcagcagcaggcagggtggccctcgccggccactcgggcagcagcggggtgctcttg
gtgagcaacctcaatgaagagatggttacgccccaaagtctctttaccctcttcggcgtg
tatggtgacgtgcagcgcgtgaagatcctctttaacaagaaggacagcgccctcatccag
ttatctgatggaaaccagtcccagctggccatgagccacctgaacggtcagaagatgtac
ggtaagatcattcgcgtgaccctgtccaagcaccagacagtgcagctgccaagggacggc
ctggacgaccagggcctcaccaaggacttcgccaactcgcccctgcaccgcttcaagaag
cctggctccaagaacttccaaaacatcttccctccctctgctaccatgcacctgtccaat
atcccggaggatgtgactgaggaggatctgcgattgctcttctccaatgctggcggaact
gtgaaggctttcaagttcttccaagaccgcaagatggcgctattgcagatgggcaccgtg
gaggaggccattcaggtcctaatcgacctgcacaattacgacatgggagccggacatcgt
ctcagggtgtcattctccaagtccacaatctaa
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