Clupea harengus (Atlantic herring): 105910903
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Entry
105910903 CDS
T09045
Symbol
vim
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105910903 (vim)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105910903 (vim)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
char04812
]
105910903 (vim)
04147 Exosome [BR:
char04147
]
105910903 (vim)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
105910903 (vim)
Cytoskeleton proteins [BR:
char04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
105910903 (vim)
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
105910903 (vim)
Exosomal proteins of other cancer cells
105910903 (vim)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
TPR_MLP1_2
KIF21A_4th
TolA_bind_tri
FKBP15
DUF6212
DUF4515
ZapB
DUF4407
DUF1664
Sec10_N
Motif
Other DBs
NCBI-GeneID:
105910903
NCBI-ProteinID:
XP_031440222
Ensembl:
ENSCHAG00000021373
UniProt:
A0A6P8GXL7
LinkDB
All DBs
Position
17:14543115..14549499
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AA seq
455 aa
AA seq
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MSRSGVQSSYNRMFGRPEQRPSTTRSTYSSRQHFSPVRSRTSFSVSSAPHSIFATKTARL
RSNAPMLKLSSDNVDFALSDAITTEFKANRTNEKAEMQHLNDRFASYIDKVRFLEQQNKI
LLAELDQLRGKGMSRVGDLYEEEMRELRRQVDQLTNEKARVELDRDNFGDDIQRLREKLQ
DELLQKEDAENNLQGFRQDVDNAALARLDLERKMESLQEEIIFLKKLHDEEMADLQAQIQ
QQHVQIDMDVAKPDLTTALRDVRMQYESLATKNIQDSEDWYKSKFADLSEAAARNNDAIR
LAKQESNDYRRQVQALTCEVDALKGTNESLERQMREVEDSFSNEAGGYQDNIARLEEDIH
NMKGEMACHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPMPNFSSFNLRESMMEV
RPMMDTMQRKVLIKTIETRDGEVINESTQNHDDLE
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaggtccggggtccagtcctcttacaataggatgttcggtaggcccgaacagcgg
ccctccactactcgttctacttactcaagtcgccaacacttcagtccagtacgctcccgg
acatctttcagcgtgtcgtccgctccccatagcatctttgccacaaagaccgccaggctc
cgcagcaatgcgcccatgctcaaactcagcagcgataatgtggactttgctctgtccgat
gccatcacaacggagttcaaagctaaccggactaatgaaaaggcagagatgcagcacctc
aacgacaggtttgccagctacatcgacaaggttcggttccttgagcagcagaacaagatt
ctccttgcagagttggatcagcttaggggcaaaggcatgtcccgcgtcggggacttgtat
gaggaggagatgagggagctgcgccgtcaggtggaccagcttacaaacgagaaagctaga
gtcgagttggaccgggacaacttcggagatgacatccagaggctccgagagaagctgcag
gatgagcttcttcagaaagaagatgcggaaaacaacctccagggcttcagacaggatgtg
gataatgctgccctggcccgtcttgacctggagaggaagatggagtccctgcaagaggag
atcatcttcctgaagaagcttcacgacgaggagatggctgacctccaagctcagatccag
cagcagcatgttcagattgacatggacgtggcaaaacccgacttgaccaccgcgctgcgg
gacgtcaggatgcagtatgagtcgctggctaccaagaacatccaggattcggaggactgg
tacaagtccaaatttgctgacctgtctgaagctgctgctcgtaataatgacgccatccgt
ctggccaagcaggagtccaatgactaccgccgacaggtgcaggctctcacctgtgaggtg
gatgccctaaaaggcactaatgagtcactggaacgtcagatgagggaggttgaagacagc
ttctccaatgaggcaggtggttaccaggacaacattgcccgtctggaggaagacatccac
aacatgaagggcgagatggcatgccacctgcgtgagtaccaggacctgctcaacgtcaag
atggcgctggacatcgagatcgccacctacaggaagctgctggagggcgaggagagcaga
atcaccactccaatgcccaacttctcttcctttaatttgagagaatccatgatggaagtc
agaccaatgatggacaccatgcagaggaaggtgttgatcaagactattgagaccagagat
ggagaagtgatcaatgaatcaacccagaaccacgatgacctggaatga
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