KEGG   Clupea harengus (Atlantic herring): 105911045
Entry
105911045         CDS       T09045                                 
Symbol
polr2d
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03020  RNA polymerase
char03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105911045 (polr2d)
  09124 Replication and repair
   03420 Nucleotide excision repair
    105911045 (polr2d)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:char03021]
    105911045 (polr2d)
   03400 DNA repair and recombination proteins [BR:char03400]
    105911045 (polr2d)
Transcription machinery [BR:char03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     105911045 (polr2d)
DNA repair and recombination proteins [BR:char03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      105911045 (polr2d)
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Maelstrom
Other DBs
NCBI-GeneID: 105911045
NCBI-ProteinID: XP_012695274
Ensembl: ENSCHAG00000017440
UniProt: A0A6P3WCQ2
LinkDB
Position
9:12850080..12852823
AA seq 142 aa
MASGGNSGQVGDVEEDASQLIFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEV
FMKTLNYTARFSRYKNRETIASVRSLLLQKKLHKFELACLANLCPEPAEEAKALIPSLEG
RFEDEELQQILDDIHVKMSFQY
NT seq 429 nt   +upstreamnt  +downstreamnt
atggcgtctggcggcaattcagggcaagttggtgacgtcgaagaggatgcttctcaactt
atcttccctaaagaatttgagaacgcagagactctactgaattctgaggttcacatgtta
ttggaacatcgaaagcaacagaatgaaagtgcagaggatgagcaagaactctctgaagtc
tttatgaagactctcaactacactgcacgattcagccgatataaaaacagggaaaccata
gctagcgttcggagcttgctattgcaaaagaaactgcacaaatttgagctggcgtgccta
gccaatttgtgtccagagcctgctgaggaggcaaaagccctgattcccagtctggaaggt
cgctttgaagatgaggagctacagcagattctggacgacattcatgtcaaaatgagcttc
cagtattga

DBGET integrated database retrieval system