Clupea harengus (Atlantic herring): 105911071
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Entry
105911071 CDS
T09045
Symbol
thbs4b
Name
(RefSeq) thrombospondin-4-B
KO
K04659
thrombospondin 2/3/4/5
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04145
Phagosome
char04510
Focal adhesion
char04512
ECM-receptor interaction
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105911071 (thbs4b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
105911071 (thbs4b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
105911071 (thbs4b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
105911071 (thbs4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105911071 (thbs4b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
105911071 (thbs4b)
00536 Glycosaminoglycan binding proteins [BR:
char00536
]
105911071 (thbs4b)
Membrane trafficking [BR:
char04131
]
Endocytosis
Phagocytosis
Opsonins
105911071 (thbs4b)
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
105911071 (thbs4b)
Exosomal proteins of colorectal cancer cells
105911071 (thbs4b)
Exosomal proteins of bladder cancer cells
105911071 (thbs4b)
Glycosaminoglycan binding proteins [BR:
char00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105911071 (thbs4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
EGF
cEGF
DUF7630
Motif
Other DBs
NCBI-GeneID:
105911071
NCBI-ProteinID:
XP_012695300
Ensembl:
ENSCHAG00000023900
UniProt:
A0A6P3WCQ9
LinkDB
All DBs
Position
12:complement(22745095..22758589)
Genome browser
AA seq
938 aa
AA seq
DB search
MDVWLLCLISQVFLSLTTVVRAQSTVYNLLTSPDCLPDLLHGGLREQGVKELFILTTFQL
QPKGGSNIFSLYNPQDNSKYFEFTVLAKLNKATLRYLRNDGRMSTVSFNNLRLADDMRHQ
LLFHLKGLPGPDQGIPGVDLHVDCRLVETITDLPVVFTGLPLQRGVQLKTLQPKAQESLE
ELKLAFGDSLANVQSLQDCHSQQMDSIQTLGVNTKQLTSQMLDLTKVINELKDILIQQVK
ETSFLRNTISECQACGLGGNDFDKPRCAPGVCFRDNGCVVTDNGVECGPCPDGYTGDGFS
CDDVDECQFNPCFPGVKCVNTVPGYRCEVCPLGFTGQSVEGVGAAFAKAHKQVCNDVDEC
KSPDNGGCTANSDCVNTMGSYQCAGCKPGFQGDQKKGCRPERSCGNRLQNPCHEHASCFE
ERDGTITCTCGIGWAGNGYLCGKDTDIDGYPDEKLRCNDVSCKKDNCMYVPNSGQEDADS
DSHGDACDEDADGDGILNDQDNCWLKPNVNQRNSDKDSHGDACDNCLMVVNPDQRDTDLD
GLGDACDDDMDGDGLKNFLDNCQRLKNPDQRDRDADGVGDACDSCPDIPNPNQSDIDNDL
VGDSCDTNQDSDGDGHQDNNDNCPLVMNSSQLDTDKDGLGDECDDDDDNDNIPDFLSPGP
DNCRLVPNPDQIDDNNDGVGDVCESDFDQDKIIDRIDSCPENAEITLTDFRAFQTVVLDP
EGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIF
GYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKSGPGEHLRNSLWHTGDTN
DQVRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADSGVMIDTTMRGGR
LGVFCFSQENIIWSNLRYRCNDTIPEDFQAFSGRHIPR
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggacgtctggctactctgtctcatctctcaagtatttttgagtcttacaacagtagtg
agagcacagtcaacagtatataacctgctgacgtcaccggactgcctgccagacctgctg
catgggggattgcgggagcagggggtcaaggagctcttcatactcaccaccttccagctc
cagccgaagggcggcagcaacatctttagcctctacaacccacaagacaacagcaagtac
ttcgagttcacggtgctggccaagctcaataaagcaacgctgcggtacctccgcaatgac
ggccgaatgagcaccgtgtcctttaataacctgcgtctggcagacgacatgcgccatcag
cttctcttccacttgaaggggctgccaggtcccgaccagggcattcctggcgtggacctt
catgtggactgcaggctggtggaaaccatcacagatctgccggtggtgtttacaggactg
cctcttcagcgcggcgtgcaactcaagactctgcagcccaaagcacaggagtcactggag
gagctgaagctagcatttggagactcgctagcgaatgtgcagtcgctgcaggattgccac
tctcagcagatggactccatccagacactgggagtcaatacgaagcaactaacgagtcag
atgttggatcttactaaagtaataaacgagctgaaagacatccttattcaacaggtcaag
gagacatcctttttaagaaacacaatctcggagtgtcaagcttgcggactgggtgggaat
gattttgacaagccgcggtgcgccccaggagtgtgtttccgtgacaacggatgtgtggtg
acagacaacggggtggagtgtgggccgtgtccggacggctacacaggagacggcttcagc
tgtgacgatgtagatgagtgtcagtttaatccctgcttcccaggagtgaagtgtgtgaac
acagtcccgggttaccgctgcgaggtgtgtcccctgggctttaccggccaatcggtggag
ggagtgggcgcggcttttgcaaaggctcacaaacaggtctgcaatgatgtggatgagtgt
aaaagtccagataacggaggctgcacagccaactcagactgcgtcaacactatgggatca
taccagtgtgcgggatgtaaaccaggctttcagggcgatcagaagaagggctgtcggcca
gagcgcagctgtggcaaccgcctgcagaatccctgccatgaacatgcctcatgttttgag
gagagagatggaaccatcacctgcacgtgtggtattggctgggcaggcaatggctacctg
tgtggaaaggacactgatattgacggctacccagatgagaagctacgctgtaatgacgta
tcctgtaaaaaggacaactgcatgtatgttccaaattctggtcaagaggacgcagactca
gacagccatggagacgcctgtgatgaagatgctgacggagatggtatactcaatgaccag
gataactgttggttgaagcctaacgtgaaccagcgcaacagtgataaggacagccatggc
gatgcctgtgataactgtctgatggtggtgaaccctgaccagcgtgacacggacttagat
ggcctgggagatgcatgcgatgatgacatggatggagatggcttaaagaacttcctggat
aactgccagcgtctgaagaaccctgatcagcgtgacagagatgctgatggagttggagac
gcttgtgacagctgtcctgacatacctaatcccaaccagtcggacattgacaatgacctt
gttggtgattcatgtgacacaaatcaagacagtgatggggatggtcaccaggacaacaat
gacaactgtccattagtgatgaacagctctcagctggacacagacaaagacggcctcggg
gatgagtgtgatgatgatgacgataatgacaacattccagatttcctgtcgcctggacca
gacaactgcaggctggtgcccaatccagaccagatagacgacaacaatgatggagtgggc
gatgtctgtgagtctgattttgaccaggataaaataatcgatcggatcgatagctgccca
gagaatgctgagatcacactgacagacttcagagccttccagaccgtagttctggaccct
gagggagacgcgcagatcgatcccaactgggtggttctgaatcagggtatggagatcgtt
cagaccatgaacagtgatcctggcctggctgtgggttacaccgcattcagtggcgtggac
ttcgaaggaaccttccacgtaaacacagtgaccgatgatgactacgctggcttcatcttt
gggtaccaggactcgtccagcttctacgtggtgatgtggaaacagacagaacaaacctac
tggcaggccacacccttcagagccgtggctgaacctggaatccagctgaaggcagtgaag
tctaaatctggtccaggagagcacctgaggaactctctgtggcacacaggagacaccaat
gaccaggtccgtctcctctggaaagatccgcgtaatgtcggctggaaggacaaagtctcc
taccgctggtacctccagcacagaccgcaagtgggctatatccgtgcgcgtttctacgag
ggcactgagctggtcgcagactcgggtgtcatgattgacaccacaatgcgaggaggacgc
ctgggcgtgttctgcttctcacaggagaacatcatctggtccaacctcagataccgctgc
aatgacaccatcccagaagatttccaagcattcagtggtcggcatattcctcgttaa
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